Analysis of Ligand-Protein Contacts in PDB entry:
1D8T


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 54 ligands in PDB entry 1D8T. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
BB9
C
2 6(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 2
MEN
C
3 8N-METHYL ASPARAGINE
lig 3
BB6
C
4 7(2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID
lig 4
BB7
C
6 9(2Z)-2-AMINO-4-METHOXY-3-SULFANYLBUT-2-ENO
lig 5
BB8
C
8 11(2S,3S)-BETA-HYDROXY-PHENYLALANINE
lig 6
BB9
C
9 5(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 7
BB9
C
10 5(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 8
MH6
C
11 43-HYDROXY-2-IMINOPROPANOIC ACID
lig 9
BB9
C
12 5(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 10
NH2
C
15 1AMINO GROUP
lig 11
BB9
D
2 6(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 12
MEN
D
3 8N-METHYL ASPARAGINE
lig 13
BB6
D
4 7(2Z)-2-AMINO-3-SULFANYLBUT-2-ENOIC ACID
lig 14
BB7
D
6 9(2Z)-2-AMINO-4-METHOXY-3-SULFANYLBUT-2-ENO
lig 15
BB8
D
8 11(2S,3S)-BETA-HYDROXY-PHENYLALANINE
lig 16
BB9
D
9 5(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 17
BB9
D
10 5(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 18
MH6
D
11 43-HYDROXY-2-IMINOPROPANOIC ACID
lig 19
BB9
D
12 5(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC ACID
lig 20
NH2
D
15 1AMINO GROUP
lig 21
MG
A
998 1MAGNESIUM ION
lig 22
GDP
A
999 28GUANOSINE-5'-DIPHOSPHATE
lig 23
ACT
A
3002 4ACETATE ION
lig 24
ACT
A
3003 4ACETATE ION
lig 25
ACT
A
3004 4ACETATE ION
lig 26
ACT
A
3005 4ACETATE ION
lig 27
ACT
A
3006 4ACETATE ION
lig 28
ACT
A
3007 4ACETATE ION
lig 29
ACT
A
3010 4ACETATE ION
lig 30
ACT
A
3013 4ACETATE ION
lig 31
ACT
A
3016 4ACETATE ION
lig 32
ACT
A
3017 4ACETATE ION
lig 33
ACT
A
3019 4ACETATE ION
lig 34
ACT
A
3020 4ACETATE ION
lig 35
ACT
A
3021 4ACETATE ION
lig 36
ACT
A
3022 4ACETATE ION
lig 37
ACT
A
3023 4ACETATE ION
lig 38
ACT
A
3025 4ACETATE ION
lig 39
ACT
A
3026 4ACETATE ION
lig 40
ACT
A
3028 4ACETATE ION
lig 41
ACT
A
3030 4ACETATE ION
lig 42
MG
B
998 1MAGNESIUM ION
lig 43
GDP
B
999 28GUANOSINE-5'-DIPHOSPHATE
lig 44
ACT
B
3001 4ACETATE ION
lig 45
ACT
B
3008 4ACETATE ION
lig 46
ACT
B
3009 4ACETATE ION
lig 47
ACT
B
3011 4ACETATE ION
lig 48
ACT
B
3012 4ACETATE ION
lig 49
ACT
B
3014 4ACETATE ION
lig 50
ACT
B
3015 4ACETATE ION
lig 51
ACT
B
3018 4ACETATE ION
lig 52
ACT
B
3024 4ACETATE ION
lig 53
ACT
B
3027 4ACETATE ION
lig 54
ACT
B
3029 4ACETATE ION