Analysis of Ligand-Protein Contacts in PDB entry:
1DNU


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 35 ligands in PDB entry 1DNU. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
CSO
C
150 7S-HYDROXYCYSTEINE
lig 2
CSO
D
150 7S-HYDROXYCYSTEINE
lig 3
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
E
3 11BETA-D-MANNOPYRANOSE
lig 6
MAN
E
4 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
E
5 11ALPHA-D-MANNOPYRANOSE
lig 8
FUC
E
6 10ALPHA-L-FUCOPYRANOSE
lig 9
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 12
MAN
F
4 11ALPHA-D-MANNOPYRANOSE
lig 13
MAN
F
5 11ALPHA-D-MANNOPYRANOSE
lig 14
FUC
F
6 10ALPHA-L-FUCOPYRANOSE
lig 15
SCN
A
105 3THIOCYANATE ION
lig 16
SO4
A
106 5SULFATE ION
lig 17
SCN
A
107 3THIOCYANATE ION
lig 18
NAG
C
620 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
C
630 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
CA
C
1 1CALCIUM ION
lig 21
SO4
C
9 5SULFATE ION
lig 22
HEM
C
10 43PROTOPORPHYRIN IX CONTAINING FE
lig 23
ACY
C
15 4ACETIC ACID
lig 24
ACY
C
17 4ACETIC ACID
lig 25
ACY
C
16 4ACETIC ACID
lig 26
SCN
B
105 3THIOCYANATE ION
lig 27
SCN
B
106 3THIOCYANATE ION
lig 28
HEM
B
107 43PROTOPORPHYRIN IX CONTAINING FE
lig 29
NAG
D
620 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
D
630 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
CA
D
2 1CALCIUM ION
lig 32
SO4
D
7 5SULFATE ION
lig 33
ACY
D
14 4ACETIC ACID
lig 34
ACY
D
13 4ACETIC ACID
lig 35
ACY
D
12 4ACETIC ACID