Analysis of Ligand-Protein Contacts in PDB entry:
1JGO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 34 ligands in PDB entry 1JGO. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MG
B
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
H2U
B
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 3
H2U
B
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 4
M2G
B
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 5
OMC
B
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
OMG
B
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
YG
B
37 39WYBUTOSINE
lig 8
PSU
B
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 9
5MC
B
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 10
7MG
B
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 11
5MC
B
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 12
5MU
B
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 13
PSU
B
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 14
1MA
B
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 15
2MG
C
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 16
H2U
C
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 17
H2U
C
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 18
M2G
C
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 19
OMC
C
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 20
OMG
C
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 21
YG
C
37 39WYBUTOSINE
lig 22
PSU
C
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 23
5MC
C
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 24
7MG
C
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 25
5MC
C
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 26
5MU
C
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 27
PSU
C
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 28
1MA
C
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 29
4SU
D
8 204-THIOURIDINE-5'-MONOPHOSPHATE
lig 30
H2U
D
20 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 31
H2U
D
21 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 32
5MC
D
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 33
5MU
D
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 34
PSU
D
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE