Analysis of Ligand-Protein Contacts in PDB entry:
1O04


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 74 ligands in PDB entry 1O04. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
NA
A
6601 1SODIUM ION
lig 2
MG
A
6701 1MAGNESIUM ION
lig 3
NAD
A
6501 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 4
GAI
A
6801 4GUANIDINE
lig 5
GAI
A
6811 4GUANIDINE
lig 6
EDO
A
6901 41,2-ETHANEDIOL
lig 7
EDO
A
6911 41,2-ETHANEDIOL
lig 8
EDO
A
6921 41,2-ETHANEDIOL
lig 9
EDO
A
6941 41,2-ETHANEDIOL
lig 10
NA
B
6602 1SODIUM ION
lig 11
MG
B
6702 1MAGNESIUM ION
lig 12
NAD
B
6502 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 13
GAI
B
6802 4GUANIDINE
lig 14
GAI
B
6812 4GUANIDINE
lig 15
EDO
B
6902 41,2-ETHANEDIOL
lig 16
EDO
B
6912 41,2-ETHANEDIOL
lig 17
EDO
B
6922 41,2-ETHANEDIOL
lig 18
EDO
B
6942 41,2-ETHANEDIOL
lig 19
NA
C
6603 1SODIUM ION
lig 20
MG
C
6703 1MAGNESIUM ION
lig 21
NAD
C
6503 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 22
GAI
C
6803 4GUANIDINE
lig 23
GAI
C
6813 4GUANIDINE
lig 24
GAI
C
6823 4GUANIDINE
lig 25
EDO
C
6903 41,2-ETHANEDIOL
lig 26
EDO
C
6913 41,2-ETHANEDIOL
lig 27
EDO
C
6923 41,2-ETHANEDIOL
lig 28
EDO
C
6943 41,2-ETHANEDIOL
lig 29
EDO
C
6963 41,2-ETHANEDIOL
lig 30
NA
D
6604 1SODIUM ION
lig 31
MG
D
6704 1MAGNESIUM ION
lig 32
NAD
D
6504 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 33
GAI
D
6804 4GUANIDINE
lig 34
GAI
D
6814 4GUANIDINE
lig 35
EDO
D
6904 41,2-ETHANEDIOL
lig 36
EDO
D
6914 41,2-ETHANEDIOL
lig 37
EDO
D
6944 41,2-ETHANEDIOL
lig 38
NA
E
6605 1SODIUM ION
lig 39
MG
E
6705 1MAGNESIUM ION
lig 40
NAD
E
6505 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 41
GAI
E
6805 4GUANIDINE
lig 42
GAI
E
6815 4GUANIDINE
lig 43
EDO
E
6905 41,2-ETHANEDIOL
lig 44
EDO
E
6915 41,2-ETHANEDIOL
lig 45
EDO
E
6925 41,2-ETHANEDIOL
lig 46
NA
F
6606 1SODIUM ION
lig 47
MG
F
6706 1MAGNESIUM ION
lig 48
NAD
F
6506 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 49
GAI
F
6806 4GUANIDINE
lig 50
GAI
F
6816 4GUANIDINE
lig 51
GAI
F
6826 4GUANIDINE
lig 52
EDO
F
6906 41,2-ETHANEDIOL
lig 53
EDO
F
6916 41,2-ETHANEDIOL
lig 54
EDO
F
6926 41,2-ETHANEDIOL
lig 55
EDO
F
6946 41,2-ETHANEDIOL
lig 56
EDO
F
6956 41,2-ETHANEDIOL
lig 57
EDO
F
6966 41,2-ETHANEDIOL
lig 58
NA
G
6607 1SODIUM ION
lig 59
MG
G
6707 1MAGNESIUM ION
lig 60
NAD
G
6507 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 61
GAI
G
6807 4GUANIDINE
lig 62
GAI
G
6817 4GUANIDINE
lig 63
EDO
G
6907 41,2-ETHANEDIOL
lig 64
EDO
G
6917 41,2-ETHANEDIOL
lig 65
EDO
G
6927 41,2-ETHANEDIOL
lig 66
NA
H
6608 1SODIUM ION
lig 67
MG
H
6708 1MAGNESIUM ION
lig 68
NAD
H
6508 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 69
GAI
H
6808 4GUANIDINE
lig 70
GAI
H
6818 4GUANIDINE
lig 71
EDO
H
6908 41,2-ETHANEDIOL
lig 72
EDO
H
6918 41,2-ETHANEDIOL
lig 73
EDO
H
6928 41,2-ETHANEDIOL
lig 74
EDO
H
6948 41,2-ETHANEDIOL