Analysis of Ligand-Protein Contacts in PDB entry:
1PPG


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 1PPG. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
HMB
I
1 8(4S)-4-HYDROXY-4-METHOXYBUTANOIC ACID
lig 2
VAI
I
5 7(2S)-2-AMINO-3-METHYLBUTANE-1,1-DIOL
lig 3
0QE
I
6 1CHLOROMETHANE
lig 4
NAG
E
401 14N-ACETYL-D-GLUCOSAMINE
lig 5
FUC
E
402 10ALPHA-L-FUCOSE
lig 6
NAG
E
403 14N-ACETYL-D-GLUCOSAMINE
lig 7
BMA
E
404 11BETA-D-MANNOSE
lig 8
MAN
E
405 11ALPHA-D-MANNOSE
lig 9
NAG
E
406 14N-ACETYL-D-GLUCOSAMINE
lig 10
GAL
E
407 11BETA-D-GALACTOSE
lig 11
MAN
E
408 11ALPHA-D-MANNOSE
lig 12
NAG
E
411 14N-ACETYL-D-GLUCOSAMINE
lig 13
FUC
E
412 10ALPHA-L-FUCOSE
lig 14
NAG
E
413 14N-ACETYL-D-GLUCOSAMINE
lig 15
BMA
E
414 11BETA-D-MANNOSE
lig 16
BMA
E
415 11BETA-D-MANNOSE
lig 17
NDG
E
416 142-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
lig 18
GLC
E
417 11ALPHA-D-GLUCOSE
lig 19
MAN
E
418 11ALPHA-D-MANNOSE