Analysis of Ligand-Protein Contacts in PDB entry:
1TRA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 1TRA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
2MG
A
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
H2U
A
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 3
H2U
A
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 4
M2G
A
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 5
OMC
A
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
OMG
A
34 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
YG
A
37 39WYBUTOSINE
lig 8
PSU
A
39 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 9
5MC
A
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 10
7MG
A
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 11
5MC
A
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 12
5MU
A
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 13
PSU
A
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 14
1MA
A
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 15
MG
A
77 1MAGNESIUM ION
lig 16
MG
A
78 1MAGNESIUM ION
lig 17
MG
A
79 1MAGNESIUM ION
lig 18
MG
A
80 1MAGNESIUM ION
lig 19
MG
A
81 1MAGNESIUM ION