Analysis of Ligand-Protein Contacts in PDB entry:
2XMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 43 ligands in PDB entry 2XMD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUL
B
3 10BETA-L-FUCOPYRANOSE
lig 4
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUL
C
3 10BETA-L-FUCOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
FUC
D
3 10ALPHA-L-FUCOPYRANOSE
lig 10
UNX
A
1538 1UNKNOWN ATOM OR ION
lig 11
UNX
A
1539 1UNKNOWN ATOM OR ION
lig 12
UNX
A
1540 1UNKNOWN ATOM OR ION
lig 13
UNX
A
1541 1UNKNOWN ATOM OR ION
lig 14
UNX
A
1542 1UNKNOWN ATOM OR ION
lig 15
UNX
A
1543 1UNKNOWN ATOM OR ION
lig 16
UNX
A
1544 1UNKNOWN ATOM OR ION
lig 17
UNX
A
1545 1UNKNOWN ATOM OR ION
lig 18
UNX
A
1546 1UNKNOWN ATOM OR ION
lig 19
UNX
A
1547 1UNKNOWN ATOM OR ION
lig 20
UNX
A
1548 1UNKNOWN ATOM OR ION
lig 21
UNX
A
1549 1UNKNOWN ATOM OR ION
lig 22
UNX
A
1550 1UNKNOWN ATOM OR ION
lig 23
UNX
A
1551 1UNKNOWN ATOM OR ION
lig 24
UNX
A
1552 1UNKNOWN ATOM OR ION
lig 25
UNX
A
1553 1UNKNOWN ATOM OR ION
lig 26
UNX
A
1568 1UNKNOWN ATOM OR ION
lig 27
UNX
A
1569 1UNKNOWN ATOM OR ION
lig 28
UNX
A
1570 1UNKNOWN ATOM OR ION
lig 29
UNX
A
1571 1UNKNOWN ATOM OR ION
lig 30
UNX
A
1572 1UNKNOWN ATOM OR ION
lig 31
DEP
A
1530 8DIETHYL PHOSPHONATE
lig 32
SO4
A
1531 5SULFATE ION
lig 33
CL
A
1532 1CHLORIDE ION
lig 34
CL
A
1533 1CHLORIDE ION
lig 35
CL
A
1534 1CHLORIDE ION
lig 36
BR
A
1535 1BROMIDE ION
lig 37
NA
A
1536 1SODIUM ION
lig 38
CA
A
1537 1CALCIUM ION
lig 39
NAG
A
1560 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
A
1561 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
A
1562 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
CL
A
1566 1CHLORIDE ION
lig 43
NA
A
1567 1SODIUM ION