Analysis of Ligand-Protein Contacts in PDB entry:
2Y1K


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 20 ligands in PDB entry 2Y1K. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
B
2 10ALPHA-L-FUCOPYRANOSE
lig 4
SO4
A
601 5SULFATE ION
lig 5
NA
A
602 1SODIUM ION
lig 6
CL
A
603 1CHLORIDE ION
lig 7
GOL
A
604 6GLYCEROL
lig 8
SO4
A
605 5SULFATE ION
lig 9
SO4
A
608 5SULFATE ION
lig 10
NAG
A
609 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
SO4
A
610 5SULFATE ION
lig 12
SO4
A
611 5SULFATE ION
lig 13
NAG
A
612 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
FUC
A
613 10ALPHA-L-FUCOPYRANOSE
lig 15
NAG
A
614 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
A
615 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
A
616 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
A
617 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
A
618 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
FUC
A
619 10ALPHA-L-FUCOPYRANOSE