Analysis of Ligand-Protein Contacts in PDB entry:
3CHB


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 32 ligands in PDB entry 3CHB. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
BGC
B
1 12BETA-D-GLUCOPYRANOSE
lig 2
GAL
B
2 11BETA-D-GALACTOPYRANOSE
lig 3
NGA
B
3 142-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE
lig 4
GAL
B
4 11BETA-D-GALACTOPYRANOSE
lig 5
SIA
B
5 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 6
BGC
I
1 12BETA-D-GLUCOPYRANOSE
lig 7
GAL
I
2 11BETA-D-GALACTOPYRANOSE
lig 8
NGA
I
3 142-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE
lig 9
GAL
I
4 11BETA-D-GALACTOPYRANOSE
lig 10
SIA
I
5 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 11
BGC
J
1 12BETA-D-GLUCOPYRANOSE
lig 12
GAL
J
2 11BETA-D-GALACTOPYRANOSE
lig 13
NGA
J
3 142-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE
lig 14
GAL
J
4 11BETA-D-GALACTOPYRANOSE
lig 15
SIA
J
5 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 16
GLC
D
107 1ALPHA-D-GLUCOPYRANOSE
lig 17
UNX
D
109 1UNKNOWN ATOM OR ION
lig 18
UNX
E
109 1UNKNOWN ATOM OR ION
lig 19
GLC
F
107 1ALPHA-D-GLUCOPYRANOSE
lig 20
UNX
F
109 1UNKNOWN ATOM OR ION
lig 21
UNX
G
109 1UNKNOWN ATOM OR ION
lig 22
MES
G
6001 122-(N-MORPHOLINO)-ETHANESULFONIC ACID
lig 23
MES
G
6002 122-(N-MORPHOLINO)-ETHANESULFONIC ACID
lig 24
UNX
H
109 1UNKNOWN ATOM OR ION
lig 25
GAL
A
1 11BETA-D-GALACTOPYRANOSE
lig 26
NGA
A
2 142-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE
lig 27
GAL
A
3 11BETA-D-GALACTOPYRANOSE
lig 28
SIA
A
4 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 29
GAL
C
1 11BETA-D-GALACTOPYRANOSE
lig 30
NGA
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE
lig 31
GAL
C
3 11BETA-D-GALACTOPYRANOSE
lig 32
SIA
C
4 20N-ACETYL-ALPHA-NEURAMINIC ACID