Analysis of Ligand-Protein Contacts in PDB entry:
3D9M


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 10 ligands in PDB entry 3D9M. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
SEP
Z
5 10PHOSPHOSERINE
lig 2
NH4
A
400 1AMMONIUM ION
lig 3
SO4
A
501 5SULFATE ION
lig 4
SO4
A
503 5SULFATE ION
lig 5
SO4
A
507 5SULFATE ION
lig 6
SO4
A
508 5SULFATE ION
lig 7
NH4
B
401 1AMMONIUM ION
lig 8
SO4
B
504 5SULFATE ION
lig 9
SO4
B
506 5SULFATE ION
lig 10
SO4
B
509 5SULFATE ION