Analysis of Ligand-Protein Contacts in PDB entry:
3DIV


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 3DIV. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
NIY
A
196 15META-NITRO-TYROSINE
lig 2
NIY
A
372 15META-NITRO-TYROSINE
lig 3
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 8
MAN
D
1 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
D
2 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
A
502 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
A
508 11ALPHA-D-MANNOPYRANOSE
lig 12
CU
A
509 1COPPER (II) ION
lig 13
CU
A
510 1COPPER (II) ION
lig 14
CU
A
511 1COPPER (II) ION
lig 15
CU
A
512 1COPPER (II) ION
lig 16
NAG
A
513 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
NAG
A
514 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
A
515 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE