Analysis of Ligand-Protein Contacts in PDB entry:
3DKK


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 16 ligands in PDB entry 3DKK. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEN
A
198 12O-[N,N-DIMETHYLPHOSPHORAMIDATE]-L-SERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
FUL
B
3 10BETA-L-FUCOPYRANOSE
lig 5
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
FUL
C
2 10BETA-L-FUCOPYRANOSE
lig 7
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
FUL
D
3 10BETA-L-FUCOPYRANOSE
lig 10
NAG
A
535 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
A
536 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
A
537 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
CL
A
541 1CHLORIDE ION
lig 14
CL
A
542 1CHLORIDE ION
lig 15
NA
A
543 1SODIUM ION
lig 16
SO4
A
544 5SULFATE ION