Analysis of Ligand-Protein Contacts in PDB entry:
3GHG


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 48 ligands in PDB entry 3GHG. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
U
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
U
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
U
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
U
4 11ALPHA-D-MANNOPYRANOSE
lig 5
NAG
U
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
GAL
U
6 11BETA-D-GALACTOPYRANOSE
lig 7
SIA
U
7 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 8
MAN
U
8 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
U
9 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
GAL
U
10 11BETA-D-GALACTOPYRANOSE
lig 11
SIA
U
11 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 12
NAG
V
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
V
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
V
3 11BETA-D-MANNOPYRANOSE
lig 15
MAN
V
4 11ALPHA-D-MANNOPYRANOSE
lig 16
NAG
V
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
GAL
V
6 11BETA-D-GALACTOPYRANOSE
lig 18
SIA
V
7 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 19
MAN
V
8 11ALPHA-D-MANNOPYRANOSE
lig 20
NAG
V
9 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
GAL
V
10 11BETA-D-GALACTOPYRANOSE
lig 22
SIA
V
11 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 23
NAG
W
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
W
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
BMA
W
3 11BETA-D-MANNOPYRANOSE
lig 26
MAN
W
4 11ALPHA-D-MANNOPYRANOSE
lig 27
MAN
W
5 11ALPHA-D-MANNOPYRANOSE
lig 28
NAG
X
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
X
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
BMA
X
3 11BETA-D-MANNOPYRANOSE
lig 31
MAN
X
4 11ALPHA-D-MANNOPYRANOSE
lig 32
NAG
X
5 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 33
GAL
X
6 11BETA-D-GALACTOPYRANOSE
lig 34
SIA
X
7 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 35
MAN
X
8 11ALPHA-D-MANNOPYRANOSE
lig 36
NAG
X
9 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
GAL
X
10 11BETA-D-GALACTOPYRANOSE
lig 38
SIA
X
11 20N-ACETYL-ALPHA-NEURAMINIC ACID
lig 39
NAG
Y
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 40
NAG
Y
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
CA
B
501 1CALCIUM ION
lig 42
CA
C
601 1CALCIUM ION
lig 43
CA
E
501 1CALCIUM ION
lig 44
CA
F
601 1CALCIUM ION
lig 45
CA
H
501 1CALCIUM ION
lig 46
CA
I
601 1CALCIUM ION
lig 47
CA
K
501 1CALCIUM ION
lig 48
CA
L
601 1CALCIUM ION