Analysis of Ligand-Protein Contacts in PDB entry:
3KDO


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 30 ligands in PDB entry 3KDO. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
KCX
A
189 12LYSINE NZ-CARBOXYLIC ACID
lig 2
KCX
B
189 12LYSINE NZ-CARBOXYLIC ACID
lig 3
KCX
C
189 12LYSINE NZ-CARBOXYLIC ACID
lig 4
KCX
D
189 12LYSINE NZ-CARBOXYLIC ACID
lig 5
KCX
E
189 12LYSINE NZ-CARBOXYLIC ACID
lig 6
KCX
F
189 12LYSINE NZ-CARBOXYLIC ACID
lig 7
KCX
G
189 12LYSINE NZ-CARBOXYLIC ACID
lig 8
KCX
H
189 12LYSINE NZ-CARBOXYLIC ACID
lig 9
KCX
I
189 12LYSINE NZ-CARBOXYLIC ACID
lig 10
KCX
J
189 12LYSINE NZ-CARBOXYLIC ACID
lig 11
CAP
A
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 12
MG
A
500 1MAGNESIUM ION
lig 13
CAP
B
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 14
MG
B
500 1MAGNESIUM ION
lig 15
CAP
C
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 16
MG
C
500 1MAGNESIUM ION
lig 17
CAP
D
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 18
MG
D
500 1MAGNESIUM ION
lig 19
CAP
E
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 20
MG
E
500 1MAGNESIUM ION
lig 21
CAP
F
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 22
MG
F
500 1MAGNESIUM ION
lig 23
CAP
G
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 24
MG
G
500 1MAGNESIUM ION
lig 25
CAP
H
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 26
MG
H
500 1MAGNESIUM ION
lig 27
CAP
I
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 28
MG
I
500 1MAGNESIUM ION
lig 29
CAP
J
600 212-CARBOXYARABINITOL-1,5-DIPHOSPHATE
lig 30
MG
J
500 1MAGNESIUM ION