Analysis of Ligand-Protein Contacts in PDB entry:
3NKM


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 3NKM. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
BMA
C
3 11BETA-D-MANNOPYRANOSE
lig 6
MAN
C
4 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
C
5 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
C
6 11ALPHA-D-MANNOPYRANOSE
lig 9
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
ZN
A
1001 1ZINC ION
lig 12
ZN
A
1002 1ZINC ION
lig 13
CA
A
1003 1CALCIUM ION
lig 14
NA
A
1004 1SODIUM ION
lig 15
K
A
1005 1POTASSIUM ION
lig 16
SO4
A
1006 5SULFATE ION
lig 17
NKP
A
1007 6 ENOATE
lig 18
SCN
A
1008 3THIOCYANATE ION
lig 19
SCN
A
1009 3THIOCYANATE ION
lig 20
EDO
A
1010 41,2-ETHANEDIOL
lig 21
EDO
A
1011 41,2-ETHANEDIOL
lig 22
EDO
A
1012 41,2-ETHANEDIOL
lig 23
EDO
A
1013 41,2-ETHANEDIOL
lig 24
EDO
A
1014 41,2-ETHANEDIOL
lig 25
EDO
A
1015 41,2-ETHANEDIOL
lig 26
EDO
A
1016 41,2-ETHANEDIOL
lig 27
EDO
A
1017 41,2-ETHANEDIOL
lig 28
EDO
A
1018 41,2-ETHANEDIOL
lig 29
EDO
A
1019 41,2-ETHANEDIOL
lig 30
EDO
A
1020 41,2-ETHANEDIOL
lig 31
EDO
A
1021 41,2-ETHANEDIOL
lig 32
EDO
A
1022 41,2-ETHANEDIOL
lig 33
EDO
A
1023 41,2-ETHANEDIOL
lig 34
EDO
A
1024 41,2-ETHANEDIOL
lig 35
EDO
A
1025 41,2-ETHANEDIOL
lig 36
EDO
A
1026 41,2-ETHANEDIOL