Analysis of Ligand-Protein Contacts in PDB entry:
3UBA


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 24 ligands in PDB entry 3UBA. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
SEP
A
198 10PHOSPHOSERINE
lig 2
NAG
B
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
NAG
B
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
HEM
A
605 43PROTOPORPHYRIN IX CONTAINING FE
lig 5
NAG
A
596 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
A
599 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
604 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
IOD
A
607 1IODIDE ION
lig 9
IOD
A
608 1IODIDE ION
lig 10
IOD
A
609 1IODIDE ION
lig 11
IOD
A
610 1IODIDE ION
lig 12
IOD
A
611 1IODIDE ION
lig 13
IOD
A
612 1IODIDE ION
lig 14
IOD
A
615 1IODIDE ION
lig 15
IOD
A
616 1IODIDE ION
lig 16
IOD
A
617 1IODIDE ION
lig 17
CA
A
606 1CALCIUM ION
lig 18
SCN
A
620 3THIOCYANATE ION
lig 19
HC4
A
700 124'-HYDROXYCINNAMIC ACID
lig 20
PEG
A
603 7DI(HYDROXYETHYL)ETHER
lig 21
PEG
A
619 7DI(HYDROXYETHYL)ETHER
lig 22
GOL
A
621 6GLYCEROL
lig 23
EDO
A
623 41,2-ETHANEDIOL
lig 24
EDO
A
624 41,2-ETHANEDIOL