Analysis of Ligand-Protein Contacts in PDB entry:
3VAG


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 18 ligands in PDB entry 3VAG. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
BRU
P
3 205-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
lig 2
BRU
E
4 205-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
lig 3
DIO
A
401 61,4-DIETHYLENE DIOXIDE
lig 4
DIO
A
402 61,4-DIETHYLENE DIOXIDE
lig 5
DIO
A
403 61,4-DIETHYLENE DIOXIDE
lig 6
SO4
A
404 5SULFATE ION
lig 7
SO4
A
405 5SULFATE ION
lig 8
SO4
A
406 5SULFATE ION
lig 9
SO4
A
407 5SULFATE ION
lig 10
GOL
A
408 6GLYCEROL
lig 11
DIO
B
401 61,4-DIETHYLENE DIOXIDE
lig 12
DIO
B
402 61,4-DIETHYLENE DIOXIDE
lig 13
DIO
B
403 61,4-DIETHYLENE DIOXIDE
lig 14
CPQ
B
404 27N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMI
lig 15
SO4
B
405 5SULFATE ION
lig 16
SO4
B
406 5SULFATE ION
lig 17
SO4
B
407 5SULFATE ION
lig 18
GOL
B
408 6GLYCEROL