Analysis of Ligand-Protein Contacts in PDB entry:
3VI3


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 41 ligands in PDB entry 3VI3. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 4
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 6
MAN
G
6 11ALPHA-D-MANNOPYRANOSE
lig 7
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
BMA
K
3 11BETA-D-MANNOPYRANOSE
lig 14
MAN
K
4 11ALPHA-D-MANNOPYRANOSE
lig 15
MAN
K
5 11ALPHA-D-MANNOPYRANOSE
lig 16
MAN
K
6 11ALPHA-D-MANNOPYRANOSE
lig 17
CA
A
2001 1CALCIUM ION
lig 18
CA
A
2002 1CALCIUM ION
lig 19
CA
A
2003 1CALCIUM ION
lig 20
CA
A
2004 1CALCIUM ION
lig 21
NAG
A
2005 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 22
NAG
A
2006 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
NAG
A
2007 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 24
NAG
A
2008 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
NAG
A
2015 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
CA
B
2001 1CALCIUM ION
lig 27
CA
B
2002 1CALCIUM ION
lig 28
MG
B
2003 1MAGNESIUM ION
lig 29
NAG
B
2004 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
CA
C
2001 1CALCIUM ION
lig 31
CA
C
2002 1CALCIUM ION
lig 32
CA
C
2003 1CALCIUM ION
lig 33
CA
C
2004 1CALCIUM ION
lig 34
NAG
C
2007 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
C
2008 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
C
2009 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
NAG
C
2016 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 38
CA
D
2001 1CALCIUM ION
lig 39
CA
D
2002 1CALCIUM ION
lig 40
MG
D
2003 1MAGNESIUM ION
lig 41
NAG
D
2004 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE