Analysis of Ligand-Protein Contacts in PDB entry:
486D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 486D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
PSU
A
13 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 2
H2U
A
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 3
H2U
A
19 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 4
M2G
A
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 5
OMC
A
32 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 6
YYG
A
37 39 BUTYRIC ACID METHYL ESTER
lig 7
5MC
A
40 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 8
5MC
A
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 9
5MU
A
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 10
PSU
A
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 11
2MG
C
10 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 12
H2U
C
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 13
H2U
C
17 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 14
M2G
C
26 25N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
lig 15
PSU
C
32 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 16
1MG
C
37 241N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 17
7MG
C
46 247N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHAT
lig 18
5MC
C
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 19
5MU
C
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 20
PSU
C
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 21
1MA
C
58 236-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 22
PSU
E
13 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 23
H2U
E
16 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 24
H2U
E
19 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 25
PSU
E
32 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 26
1MG
E
37 241N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 27
5MC
E
49 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 28
5MU
E
54 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 29
PSU
E
55 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 30
IR
F
1 1IRIDIUM ION
lig 31
IR
F
2 1IRIDIUM ION
lig 32
IR
F
3 1IRIDIUM ION
lig 33
IR
F
4 1IRIDIUM ION