Analysis of Ligand-Protein Contacts in PDB entry:
4RYD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 60 ligands in PDB entry 4RYD. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
2UE
H
1 141-[4-(2-OXOETHYL)BENZYL]GUANIDINE
lig 2
TBG
H
3 83-METHYL-L-VALINE
lig 3
00S
H
5 114-(AMINOMETHYL)BENZENECARBOXIMIDAMIDE
lig 4
2UE
I
1 141-[4-(2-OXOETHYL)BENZYL]GUANIDINE
lig 5
TBG
I
3 83-METHYL-L-VALINE
lig 6
00S
I
5 114-(AMINOMETHYL)BENZENECARBOXIMIDAMIDE
lig 7
2UE
J
1 141-[4-(2-OXOETHYL)BENZYL]GUANIDINE
lig 8
TBG
J
3 83-METHYL-L-VALINE
lig 9
00S
J
5 114-(AMINOMETHYL)BENZENECARBOXIMIDAMIDE
lig 10
2UE
K
1 141-[4-(2-OXOETHYL)BENZYL]GUANIDINE
lig 11
TBG
K
3 83-METHYL-L-VALINE
lig 12
00S
K
5 114-(AMINOMETHYL)BENZENECARBOXIMIDAMIDE
lig 13
2UE
L
1 141-[4-(2-OXOETHYL)BENZYL]GUANIDINE
lig 14
TBG
L
3 83-METHYL-L-VALINE
lig 15
00S
L
5 114-(AMINOMETHYL)BENZENECARBOXIMIDAMIDE
lig 16
2UE
N
1 141-[4-(2-OXOETHYL)BENZYL]GUANIDINE
lig 17
TBG
N
3 83-METHYL-L-VALINE
lig 18
00S
N
5 114-(AMINOMETHYL)BENZENECARBOXIMIDAMIDE
lig 19
FMT
A
601 3FORMIC ACID
lig 20
FMT
A
602 3FORMIC ACID
lig 21
FMT
A
603 3FORMIC ACID
lig 22
CA
A
604 1CALCIUM ION
lig 23
CA
A
605 1CALCIUM ION
lig 24
CA
A
606 1CALCIUM ION
lig 25
NA
A
607 1SODIUM ION
lig 26
FMT
B
601 3FORMIC ACID
lig 27
FMT
B
602 3FORMIC ACID
lig 28
FMT
B
603 3FORMIC ACID
lig 29
CA
B
604 1CALCIUM ION
lig 30
CA
B
605 1CALCIUM ION
lig 31
CA
B
606 1CALCIUM ION
lig 32
NA
B
607 1SODIUM ION
lig 33
FMT
C
601 3FORMIC ACID
lig 34
FMT
C
602 3FORMIC ACID
lig 35
FMT
C
603 3FORMIC ACID
lig 36
CA
C
604 1CALCIUM ION
lig 37
CA
C
605 1CALCIUM ION
lig 38
CA
C
606 1CALCIUM ION
lig 39
NA
C
607 1SODIUM ION
lig 40
FMT
D
601 3FORMIC ACID
lig 41
FMT
D
602 3FORMIC ACID
lig 42
FMT
D
603 3FORMIC ACID
lig 43
CA
D
604 1CALCIUM ION
lig 44
CA
D
605 1CALCIUM ION
lig 45
CA
D
606 1CALCIUM ION
lig 46
NA
D
607 1SODIUM ION
lig 47
FMT
E
601 3FORMIC ACID
lig 48
FMT
E
602 3FORMIC ACID
lig 49
FMT
E
603 3FORMIC ACID
lig 50
CA
E
604 1CALCIUM ION
lig 51
CA
E
605 1CALCIUM ION
lig 52
CA
E
606 1CALCIUM ION
lig 53
NA
E
607 1SODIUM ION
lig 54
FMT
F
601 3FORMIC ACID
lig 55
FMT
F
602 3FORMIC ACID
lig 56
FMT
F
603 3FORMIC ACID
lig 57
CA
F
604 1CALCIUM ION
lig 58
CA
F
605 1CALCIUM ION
lig 59
CA
F
606 1CALCIUM ION
lig 60
NA
F
607 1SODIUM ION