Analysis of Ligand-Protein Contacts in PDB entry:
4YMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 33 ligands in PDB entry 4YMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MAN
G
1 12ALPHA-D-MANNOPYRANOSE
lig 2
MAN
G
2 11ALPHA-D-MANNOPYRANOSE
lig 3
MAN
H
1 12ALPHA-D-MANNOPYRANOSE
lig 4
MAN
H
2 11ALPHA-D-MANNOPYRANOSE
lig 5
MAN
I
1 12ALPHA-D-MANNOPYRANOSE
lig 6
MAN
I
2 11ALPHA-D-MANNOPYRANOSE
lig 7
MAN
J
1 12ALPHA-D-MANNOPYRANOSE
lig 8
MAN
J
2 11ALPHA-D-MANNOPYRANOSE
lig 9
CA
A
303 1CALCIUM ION
lig 10
CA
A
304 1CALCIUM ION
lig 11
CA
A
305 1CALCIUM ION
lig 12
GOL
A
306 6GLYCEROL
lig 13
CA
B
303 1CALCIUM ION
lig 14
CA
B
304 1CALCIUM ION
lig 15
CA
B
305 1CALCIUM ION
lig 16
GOL
B
306 6GLYCEROL
lig 17
CA
D
303 1CALCIUM ION
lig 18
CA
D
304 1CALCIUM ION
lig 19
CA
D
305 1CALCIUM ION
lig 20
GOL
D
306 6GLYCEROL
lig 21
CA
F
303 1CALCIUM ION
lig 22
CA
F
304 1CALCIUM ION
lig 23
CA
F
305 1CALCIUM ION
lig 24
GOL
F
306 6GLYCEROL
lig 25
GOL
C
301 6GLYCEROL
lig 26
CA
C
302 1CALCIUM ION
lig 27
CA
C
303 1CALCIUM ION
lig 28
CA
C
304 1CALCIUM ION
lig 29
GOL
C
305 6GLYCEROL
lig 30
CA
E
301 1CALCIUM ION
lig 31
CA
E
302 1CALCIUM ION
lig 32
CA
E
303 1CALCIUM ION
lig 33
GOL
E
304 6GLYCEROL