Analysis of Ligand-Protein Contacts in PDB entry:
5D4D


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 5D4D. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
MG
B
2001 1MAGNESIUM ION
lig 2
ZN
D
2001 1ZINC ION
lig 3
ZN
D
2002 1ZINC ION
lig 4
MG
D
2003 1MAGNESIUM ION
lig 5
MG
D
2004 1MAGNESIUM ION
lig 6
C
D
2005 20CYTIDINE-5'-MONOPHOSPHATE
lig 7
CTP
D
2006 9CYTIDINE-5'-TRIPHOSPHATE
lig 8
MG
D
2007 1MAGNESIUM ION
lig 9
NAD
D
2008 44NICOTINAMIDE-ADENINE-DINUCLEOTIDE
lig 10
MG
F
2001 1MAGNESIUM ION
lig 11
MG
L
2001 1MAGNESIUM ION
lig 12
CTP
M
1201 9CYTIDINE-5'-TRIPHOSPHATE
lig 13
ZN
N
2001 1ZINC ION
lig 14
ZN
N
2002 1ZINC ION
lig 15
MG
N
2003 1MAGNESIUM ION
lig 16
MG
N
2004 1MAGNESIUM ION
lig 17
C
N
2005 20CYTIDINE-5'-MONOPHOSPHATE
lig 18
MG
N
2006 1MAGNESIUM ION
lig 19
MG
P
2001 1MAGNESIUM ION
lig 20
A
R
101 23ADENOSINE-5'-MONOPHOSPHATE