Analysis of Ligand-Protein Contacts in PDB entry:
5M8Q


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 49 ligands in PDB entry 5M8Q. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
E
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
E
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
FUC
E
3 10ALPHA-L-FUCOPYRANOSE
lig 4
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
MAN
G
3 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 11
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
FUC
I
2 10ALPHA-L-FUCOPYRANOSE
lig 15
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
FUC
J
2 10ALPHA-L-FUCOPYRANOSE
lig 17
NAG
K
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 18
NAG
K
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 19
NAG
L
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 20
NAG
L
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
MAN
L
3 11ALPHA-D-MANNOPYRANOSE
lig 22
MAN
L
4 11ALPHA-D-MANNOPYRANOSE
lig 23
MAN
L
5 11ALPHA-D-MANNOPYRANOSE
lig 24
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 25
FUC
M
2 10ALPHA-L-FUCOPYRANOSE
lig 26
NAG
N
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 27
FUC
N
2 10ALPHA-L-FUCOPYRANOSE
lig 28
NAG
O
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 29
NAG
O
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 30
NAG
A
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 31
ZN
A
514 1ZINC ION
lig 32
ZN
A
515 1ZINC ION
lig 33
KOJ
A
516 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
lig 34
NAG
B
501 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 35
NAG
B
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 36
NAG
B
505 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 37
ZN
B
506 1ZINC ION
lig 38
ZN
B
507 1ZINC ION
lig 39
KOJ
B
508 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
lig 40
NAG
C
503 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 41
NAG
C
511 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 42
ZN
C
512 1ZINC ION
lig 43
ZN
C
513 1ZINC ION
lig 44
KOJ
C
514 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
lig 45
ZN
C
515 1ZINC ION
lig 46
NAG
D
507 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 47
ZN
D
508 1ZINC ION
lig 48
ZN
D
509 1ZINC ION
lig 49
KOJ
D
510 105-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE