Analysis of Ligand-Protein Contacts in PDB entry:
5AFL


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 24 ligands in PDB entry 5AFL. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 4
BMA
F
4 11BETA-D-MANNOPYRANOSE
lig 5
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
I
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
I
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
J
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
NAG
J
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
L0B
A
1205 25ALPHA-LOBELINE
lig 14
GOL
A
1206 6GLYCEROL
lig 15
GOL
A
1207 6GLYCEROL
lig 16
TLA
B
1205 10L(+)-TARTARIC ACID
lig 17
GOL
B
1206 6GLYCEROL
lig 18
L0B
C
1205 25ALPHA-LOBELINE
lig 19
L0B
C
1206 25ALPHA-LOBELINE
lig 20
L0B
D
1205 25ALPHA-LOBELINE
lig 21
GOL
D
1206 6GLYCEROL
lig 22
L0B
E
1205 25ALPHA-LOBELINE
lig 23
GOL
E
1206 6GLYCEROL
lig 24
FHV
E
1207 15N-(3-METHYLPHENYL)PYRROLIDINE-1-CARBOXAMID