Analysis of Ligand-Protein Contacts in PDB entry:
5D4C


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 21 ligands in PDB entry 5D4C. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
MG
B
2001 1MAGNESIUM ION
lig 2
ZN
D
2001 1ZINC ION
lig 3
ZN
D
2002 1ZINC ION
lig 4
MG
D
2003 1MAGNESIUM ION
lig 5
MG
D
2004 1MAGNESIUM ION
lig 6
C
D
2005 20CYTIDINE-5'-MONOPHOSPHATE
lig 7
CTP
D
2006 9CYTIDINE-5'-TRIPHOSPHATE
lig 8
MG
D
2007 1MAGNESIUM ION
lig 9
ATP
D
2008 31ADENOSINE-5'-TRIPHOSPHATE
lig 10
MG
F
2001 1MAGNESIUM ION
lig 11
MG
K
901 1MAGNESIUM ION
lig 12
MG
L
2001 1MAGNESIUM ION
lig 13
MG
N
1601 1MAGNESIUM ION
lig 14
ZN
N
1602 1ZINC ION
lig 15
ZN
N
1603 1ZINC ION
lig 16
MG
N
1604 1MAGNESIUM ION
lig 17
C
N
1605 20CYTIDINE-5'-MONOPHOSPHATE
lig 18
CTP
N
1606 9CYTIDINE-5'-TRIPHOSPHATE
lig 19
MG
N
1607 1MAGNESIUM ION
lig 20
ATP
N
1608 31ADENOSINE-5'-TRIPHOSPHATE
lig 21
MG
P
2001 1MAGNESIUM ION