Analysis of Ligand-Protein Contacts in PDB entry:
5D4E


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 19 ligands in PDB entry 5D4E. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
MG
B
2001 1MAGNESIUM ION
lig 2
ZN
D
2001 1ZINC ION
lig 3
ZN
D
2002 1ZINC ION
lig 4
MG
D
2003 1MAGNESIUM ION
lig 5
MG
D
2004 1MAGNESIUM ION
lig 6
C
D
2005 20CYTIDINE-5'-MONOPHOSPHATE
lig 7
DPO
D
2006 9DIPHOSPHATE
lig 8
MG
D
2007 1MAGNESIUM ION
lig 9
COD
D
2008 28DEPHOSPHO COENZYME A
lig 10
MG
F
2001 1MAGNESIUM ION
lig 11
MG
N
1601 1MAGNESIUM ION
lig 12
ZN
N
1602 1ZINC ION
lig 13
ZN
N
1603 1ZINC ION
lig 14
MG
N
1604 1MAGNESIUM ION
lig 15
C
N
1605 20CYTIDINE-5'-MONOPHOSPHATE
lig 16
DPO
N
1606 9DIPHOSPHATE
lig 17
MG
N
1607 1MAGNESIUM ION
lig 18
COD
N
1608 27DEPHOSPHO COENZYME A
lig 19
MG
P
2001 1MAGNESIUM ION