Analysis of Ligand-Protein Contacts in PDB entry:
5LGD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 20 ligands in PDB entry 5LGD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
MAN
C
3 11ALPHA-D-MANNOPYRANOSE
lig 4
NAG
A
504 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
A
505 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
A
506 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
507 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
NAG
A
508 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 9
NAG
A
509 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 10
NAG
A
510 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 11
NAG
A
511 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 12
PLM
A
512 18PALMITIC ACID
lig 13
PLM
A
513 18PALMITIC ACID
lig 14
GOL
A
514 6GLYCEROL
lig 15
GOL
A
515 6GLYCEROL
lig 16
GOL
A
516 6GLYCEROL
lig 17
GOL
A
517 6GLYCEROL
lig 18
TRS
A
518 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
lig 19
GOL
B
801 6GLYCEROL
lig 20
TRS
B
802 82-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL