Analysis of
Ligand-Protein
Contacts in PDB entry:
Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
Note, this PDB entry contains modified
residue(s) PHOSPHOSERINE (SEP) . This residue is treated as
heterogroup (ligand) both in the PDB entry and
by LPC/CSU analysis.
There are 5 ligands
in PDB entry 5MYC.
Click on ligand of interest for
LPC analysis.
| HET
ID | Chain
ID |
Residue
N | Number
of atoms
| Ligand name |
|---|
| lig 1 |
SEP | P
| 373 |
10 | PHOSPHOSERINE
|
| lig 2 |
CA | A
| 301 |
1 | CALCIUM ION
|
| lig 3 |
CA | A
| 302 |
1 | CALCIUM ION
|
| lig 4 |
CL | A
| 303 |
1 | CHLORIDE ION
|
| lig 5 |
NA | A
| 304 |
1 | SODIUM ION
|