Analysis of Ligand-Protein Contacts in PDB entry:
5VMD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 23 ligands in PDB entry 5VMD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
ZN
A
1001 1ZINC ION
lig 2
ZN
A
1002 1ZINC ION
lig 3
ZN
A
1003 1ZINC ION
lig 4
ZN
A
1004 1ZINC ION
lig 5
ZN
A
1005 1ZINC ION
lig 6
EDO
A
1006 41,2-ETHANEDIOL
lig 7
EDO
A
1007 41,2-ETHANEDIOL
lig 8
EDO
A
1008 41,2-ETHANEDIOL
lig 9
EDO
A
1009 41,2-ETHANEDIOL
lig 10
ZN
B
1001 1ZINC ION
lig 11
ZN
B
1002 1ZINC ION
lig 12
ZN
B
1003 1ZINC ION
lig 13
ZN
B
1004 1ZINC ION
lig 14
ZN
B
1005 1ZINC ION
lig 15
EDO
B
1006 41,2-ETHANEDIOL
lig 16
EDO
B
1007 41,2-ETHANEDIOL
lig 17
ZN
C
1001 1ZINC ION
lig 18
ZN
C
1002 1ZINC ION
lig 19
EDO
C
1003 41,2-ETHANEDIOL
lig 20
ZN
D
1001 1ZINC ION
lig 21
ZN
D
1002 1ZINC ION
lig 22
EDO
D
1003 41,2-ETHANEDIOL
lig 23
EDO
D
1004 41,2-ETHANEDIOL