Analysis of Ligand-Protein Contacts in PDB entry:
5VRY


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 11 ligands in PDB entry 5VRY. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
8OG
T
7 238-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
lig 2
MG
T
101 1MAGNESIUM ION
lig 3
TTP
P
101 29THYMIDINE-5'-TRIPHOSPHATE
lig 4
MG
P
102 1MAGNESIUM ION
lig 5
MG
P
103 1MAGNESIUM ION
lig 6
MG
P
104 1MAGNESIUM ION
lig 7
MG
P
105 1MAGNESIUM ION
lig 8
PPV
P
106 9PYROPHOSPHATE
lig 9
MG
A
401 1MAGNESIUM ION
lig 10
CL
A
402 1CHLORIDE ION
lig 11
IMD
A
403 5IMIDAZOLE