Analysis of Ligand-Protein Contacts in PDB entry:
5W97


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and by LPC/CSU analysis.


There are 62 ligands in PDB entry 5W97. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
FME
A
1 10N-FORMYLMETHIONINE
lig 2
FME
B
1 10N-FORMYLMETHIONINE
lig 3
TPO
G
11 11PHOSPHOTHREONINE
lig 4
SAC
I
1 9N-ACETYL-SERINE
lig 5
FME
a
1 10N-FORMYLMETHIONINE
lig 6
FME
b
1 10N-FORMYLMETHIONINE
lig 7
TPO
g
11 11PHOSPHOTHREONINE
lig 8
SAC
i
1 9N-ACETYL-SERINE
lig 9
HEA
A
601 60HEME-A
lig 10
HEA
A
602 60HEME-A
lig 11
CU
A
603 1COPPER (II) ION
lig 12
MG
A
604 1MAGNESIUM ION
lig 13
NA
A
605 1SODIUM ION
lig 14
PGV
A
606 51 OCTADEC-11-ENOATE
lig 15
PGV
A
607 51 OCTADEC-11-ENOATE
lig 16
TGL
A
608 63TRISTEAROYLGLYCEROL
lig 17
CMO
A
609 2CARBON MONOXIDE
lig 18
CUA
B
301 2DINUCLEAR COPPER ION
lig 19
PSC
B
302 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 20
CHD
B
303 29CHOLIC ACID
lig 21
CHD
C
301 29CHOLIC ACID
lig 22
PEK
C
302 53 11,14-TETRAENOATE
lig 23
PGV
C
303 51 OCTADEC-11-ENOATE
lig 24
PGV
C
304 51 OCTADEC-11-ENOATE
lig 25
CDL
C
305 100CARDIOLIPIN
lig 26
CHD
C
306 29CHOLIC ACID
lig 27
DMU
C
307 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 28
PEK
C
308 53 11,14-TETRAENOATE
lig 29
PEK
C
309 53 11,14-TETRAENOATE
lig 30
TGL
D
201 63TRISTEAROYLGLYCEROL
lig 31
ZN
F
101 1ZINC ION
lig 32
CDL
G
101 100CARDIOLIPIN
lig 33
PEK
G
102 53 11,14-TETRAENOATE
lig 34
PGV
G
103 51 OCTADEC-11-ENOATE
lig 35
CHD
J
101 29CHOLIC ACID
lig 36
TGL
L
101 63TRISTEAROYLGLYCEROL
lig 37
DMU
M
101 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 38
HEA
a
601 60HEME-A
lig 39
HEA
a
602 60HEME-A
lig 40
CU
a
603 1COPPER (II) ION
lig 41
MG
a
604 1MAGNESIUM ION
lig 42
NA
a
605 1SODIUM ION
lig 43
TGL
a
606 63TRISTEAROYLGLYCEROL
lig 44
PGV
a
607 51 OCTADEC-11-ENOATE
lig 45
CMO
a
608 2CARBON MONOXIDE
lig 46
CHD
b
301 29CHOLIC ACID
lig 47
CUA
b
302 2DINUCLEAR COPPER ION
lig 48
PGV
c
301 51 OCTADEC-11-ENOATE
lig 49
CHD
c
302 29CHOLIC ACID
lig 50
PEK
c
303 53 11,14-TETRAENOATE
lig 51
PGV
c
304 51 OCTADEC-11-ENOATE
lig 52
CDL
c
305 100CARDIOLIPIN
lig 53
CHD
c
306 29CHOLIC ACID
lig 54
DMU
c
307 33DECYL-BETA-D-MALTOPYRANOSIDE
lig 55
PSC
e
201 52 17,20-DIEN-1-AMINIUM 4-OXIDE
lig 56
ZN
f
101 1ZINC ION
lig 57
PEK
g
102 53 11,14-TETRAENOATE
lig 58
CDL
g
103 100CARDIOLIPIN
lig 59
TGL
i
101 63TRISTEAROYLGLYCEROL
lig 60
CHD
j
101 29CHOLIC ACID
lig 61
TGL
l
101 63TRISTEAROYLGLYCEROL
lig 62
DMU
m
401 33DECYL-BETA-D-MALTOPYRANOSIDE