Analysis of Ligand-Protein Contacts in PDB entry:
5YDJ


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 39 ligands in PDB entry 5YDJ. Click on ligand of interest for LPC analysis.


HET
ID
Chain
ID
Residue
N
Number
of atoms
Ligand name
lig 1
SEB
A
360 16O-BENZYLSULFONYL-SERINE
lig 2
SEB
B
360 16O-BENZYLSULFONYL-SERINE
lig 3
NAG
C
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 4
NAG
C
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
D
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
NAG
D
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 7
NAG
A
801 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 8
SO4
A
802 5SULFATE ION
lig 9
SO4
A
803 5SULFATE ION
lig 10
SO4
A
804 5SULFATE ION
lig 11
SO4
A
805 5SULFATE ION
lig 12
SO4
A
806 5SULFATE ION
lig 13
SO4
A
807 5SULFATE ION
lig 14
SO4
A
808 5SULFATE ION
lig 15
SO4
A
809 5SULFATE ION
lig 16
SO4
A
810 5SULFATE ION
lig 17
SO4
A
811 5SULFATE ION
lig 18
SO4
A
812 5SULFATE ION
lig 19
SO4
A
813 5SULFATE ION
lig 20
SO4
A
814 5SULFATE ION
lig 21
CO
A
815 1COBALT (II) ION
lig 22
NAG
B
801 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 23
SO4
B
802 5SULFATE ION
lig 24
SO4
B
803 5SULFATE ION
lig 25
SO4
B
804 5SULFATE ION
lig 26
SO4
B
805 5SULFATE ION
lig 27
SO4
B
806 5SULFATE ION
lig 28
SO4
B
807 5SULFATE ION
lig 29
SO4
B
808 5SULFATE ION
lig 30
SO4
B
809 5SULFATE ION
lig 31
SO4
B
810 5SULFATE ION
lig 32
SO4
B
811 5SULFATE ION
lig 33
SO4
B
812 5SULFATE ION
lig 34
SO4
B
813 5SULFATE ION
lig 35
SO4
B
814 5SULFATE ION
lig 36
SO4
B
815 5SULFATE ION
lig 37
SO4
B
816 5SULFATE ION
lig 38
SO4
B
817 5SULFATE ION
lig 39
CO
B
818 1COBALT (II) ION