Analysis of Ligand-Protein Contacts in PDB entry:
6D6U


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 36 ligands in PDB entry 6D6U. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
NAG
F
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 2
NAG
F
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 3
BMA
F
3 11BETA-D-MANNOPYRANOSE
lig 4
NAG
G
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 5
NAG
G
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 6
BMA
G
3 11BETA-D-MANNOPYRANOSE
lig 7
MAN
G
4 11ALPHA-D-MANNOPYRANOSE
lig 8
MAN
G
5 11ALPHA-D-MANNOPYRANOSE
lig 9
MAN
G
6 11ALPHA-D-MANNOPYRANOSE
lig 10
MAN
G
7 11ALPHA-D-MANNOPYRANOSE
lig 11
MAN
G
8 11ALPHA-D-MANNOPYRANOSE
lig 12
NAG
H
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 13
NAG
H
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 14
BMA
H
3 11BETA-D-MANNOPYRANOSE
lig 15
NAG
M
1 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 16
NAG
M
2 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 17
BMA
M
3 11BETA-D-MANNOPYRANOSE
lig 18
MAN
M
4 11ALPHA-D-MANNOPYRANOSE
lig 19
MAN
M
5 11ALPHA-D-MANNOPYRANOSE
lig 20
NAG
A
404 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 21
ABU
A
405 7GAMMA-AMINO-BUTANOIC ACID
lig 22
Y01
A
406 21CHOLESTEROL HEMISUCCINATE
lig 23
Y01
B
409 21CHOLESTEROL HEMISUCCINATE
lig 24
Y01
B
410 21CHOLESTEROL HEMISUCCINATE
lig 25
NAG
C
404 142-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
lig 26
ABU
C
405 7GAMMA-AMINO-BUTANOIC ACID
lig 27
Y01
C
406 21CHOLESTEROL HEMISUCCINATE
lig 28
Y01
C
407 21CHOLESTEROL HEMISUCCINATE
lig 29
Y01
C
408 21CHOLESTEROL HEMISUCCINATE
lig 30
Y01
C
409 21CHOLESTEROL HEMISUCCINATE
lig 31
Y01
D
406 21CHOLESTEROL HEMISUCCINATE
lig 32
Y01
D
407 21CHOLESTEROL HEMISUCCINATE
lig 33
Y01
D
408 21CHOLESTEROL HEMISUCCINATE
lig 34
Y01
D
409 21CHOLESTEROL HEMISUCCINATE
lig 35
FYP
D
410 22 5-A][1,4]BENZODIAZEPINE-3-CARBOXYLATE
lig 36
Y01
E
401 21CHOLESTEROL HEMISUCCINATE