Analysis of Ligand-Protein Contacts in PDB entry:
8CGD


Ligand-Protein Contacts (LPC) are derived with the LPC software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).

There are 371 ligands in PDB entry 8CGD. Click on ligand of interest for LPC analysis.


HET
ID		Chain
ID		 Residue
N		Number
of atoms 		Ligand name
lig 1
1MG
a
745 241N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 2
PSU
a
746 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 3
5MU
a
747 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 4
PSU
a
955 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 5
6MZ
a
1618 23N6-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 6
2MG
a
1835 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 7
PSU
a
1911 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 8
3TD
a
1915 21 TETRAHYDROPYRIMIDIN-5-YL)-5-O-PHOSPHONO-D
lig 9
PSU
a
1917 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 10
5MU
a
1939 215-METHYLURIDINE 5'-MONOPHOSPHATE
lig 11
5MC
a
1962 215-METHYLCYTIDINE-5'-MONOPHOSPHATE
lig 12
6MZ
a
2030 23N6-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 13
G7M
a
2069 24N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE
lig 14
OMG
a
2251 24O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 15
2MG
a
2445 242N-METHYLGUANOSINE-5'-MONOPHOSPHATE
lig 16
H2U
a
2449 205,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
lig 17
PSU
a
2457 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 18
OMC
a
2498 21O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
lig 19
2MA
a
2503 232-METHYLADENOSINE-5'-MONOPHOSPHATE
lig 20
PSU
a
2504 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 21
OMU
a
2552 21O2'-METHYLURIDINE 5'-MONOPHOSPHATE
lig 22
PSU
a
2580 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 23
PSU
a
2604 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 24
PSU
a
2605 20PSEUDOURIDINE-5'-MONOPHOSPHATE
lig 25
MEQ
d
150 10N5-METHYLGLUTAMINE
lig 26
4D4
l
81 12 ACID
lig 27
MS6
l
82 8(2S)-2-AMINO-4-(METHYLSULFANYL)BUTANE-1-TH
lig 28
ZN
3
101 1ZINC ION
lig 29
ACT
a
3001 4ACETATE ION
lig 30
CLY
a
3002 27CLINDAMYCIN
lig 31
AM2
a
3003 37APRAMYCIN
lig 32
MG
a
3004 1MAGNESIUM ION
lig 33
MG
a
3005 1MAGNESIUM ION
lig 34
MG
a
3006 1MAGNESIUM ION
lig 35
MG
a
3007 1MAGNESIUM ION
lig 36
MG
a
3008 1MAGNESIUM ION
lig 37
MG
a
3009 1MAGNESIUM ION
lig 38
MG
a
3010 1MAGNESIUM ION
lig 39
MG
a
3011 1MAGNESIUM ION
lig 40
MG
a
3012 1MAGNESIUM ION
lig 41
MG
a
3013 1MAGNESIUM ION
lig 42
MG
a
3014 1MAGNESIUM ION
lig 43
MG
a
3015 1MAGNESIUM ION
lig 44
MG
a
3016 1MAGNESIUM ION
lig 45
MG
a
3017 1MAGNESIUM ION
lig 46
MG
a
3018 1MAGNESIUM ION
lig 47
MG
a
3019 1MAGNESIUM ION
lig 48
MG
a
3020 1MAGNESIUM ION
lig 49
MG
a
3021 1MAGNESIUM ION
lig 50
MG
a
3022 1MAGNESIUM ION
lig 51
MG
a
3023 1MAGNESIUM ION
lig 52
MG
a
3024 1MAGNESIUM ION
lig 53
MG
a
3025 1MAGNESIUM ION
lig 54
MG
a
3026 1MAGNESIUM ION
lig 55
MG
a
3027 1MAGNESIUM ION
lig 56
MG
a
3028 1MAGNESIUM ION
lig 57
MG
a
3029 1MAGNESIUM ION
lig 58
MG
a
3030 1MAGNESIUM ION
lig 59
MG
a
3031 1MAGNESIUM ION
lig 60
MG
a
3032 1MAGNESIUM ION
lig 61
MG
a
3033 1MAGNESIUM ION
lig 62
MG
a
3034 1MAGNESIUM ION
lig 63
MG
a
3035 1MAGNESIUM ION
lig 64
MG
a
3036 1MAGNESIUM ION
lig 65
MG
a
3037 1MAGNESIUM ION
lig 66
MG
a
3038 1MAGNESIUM ION
lig 67
MG
a
3039 1MAGNESIUM ION
lig 68
MG
a
3040 1MAGNESIUM ION
lig 69
MG
a
3041 1MAGNESIUM ION
lig 70
MG
a
3042 1MAGNESIUM ION
lig 71
MG
a
3043 1MAGNESIUM ION
lig 72
MG
a
3044 1MAGNESIUM ION
lig 73
MG
a
3045 1MAGNESIUM ION
lig 74
MG
a
3046 1MAGNESIUM ION
lig 75
MG
a
3047 1MAGNESIUM ION
lig 76
MG
a
3048 1MAGNESIUM ION
lig 77
MG
a
3049 1MAGNESIUM ION
lig 78
MG
a
3050 1MAGNESIUM ION
lig 79
MG
a
3051 1MAGNESIUM ION
lig 80
MG
a
3052 1MAGNESIUM ION
lig 81
MG
a
3053 1MAGNESIUM ION
lig 82
MG
a
3054 1MAGNESIUM ION
lig 83
MG
a
3055 1MAGNESIUM ION
lig 84
MG
a
3056 1MAGNESIUM ION
lig 85
MG
a
3057 1MAGNESIUM ION
lig 86
MG
a
3058 1MAGNESIUM ION
lig 87
MG
a
3059 1MAGNESIUM ION
lig 88
MG
a
3060 1MAGNESIUM ION
lig 89
MG
a
3061 1MAGNESIUM ION
lig 90
MG
a
3062 1MAGNESIUM ION
lig 91
MG
a
3063 1MAGNESIUM ION
lig 92
MG
a
3064 1MAGNESIUM ION
lig 93
MG
a
3065 1MAGNESIUM ION
lig 94
MG
a
3066 1MAGNESIUM ION
lig 95
MG
a
3067 1MAGNESIUM ION
lig 96
MG
a
3068 1MAGNESIUM ION
lig 97
MG
a
3069 1MAGNESIUM ION
lig 98
MG
a
3070 1MAGNESIUM ION
lig 99
MG
a
3071 1MAGNESIUM ION
lig 100
MG
a
3072 1MAGNESIUM ION
lig 101
MG
a
3073 1MAGNESIUM ION
lig 102
MG
a
3074 1MAGNESIUM ION
lig 103
MG
a
3075 1MAGNESIUM ION
lig 104
MG
a
3076 1MAGNESIUM ION
lig 105
MG
a
3077 1MAGNESIUM ION
lig 106
MG
a
3078 1MAGNESIUM ION
lig 107
MG
a
3079 1MAGNESIUM ION
lig 108
MG
a
3080 1MAGNESIUM ION
lig 109
MG
a
3081 1MAGNESIUM ION
lig 110
MG
a
3082 1MAGNESIUM ION
lig 111
MG
a
3083 1MAGNESIUM ION
lig 112
MG
a
3084 1MAGNESIUM ION
lig 113
MG
a
3085 1MAGNESIUM ION
lig 114
MG
a
3086 1MAGNESIUM ION
lig 115
MG
a
3087 1MAGNESIUM ION
lig 116
MG
a
3088 1MAGNESIUM ION
lig 117
MG
a
3089 1MAGNESIUM ION
lig 118
MG
a
3090 1MAGNESIUM ION
lig 119
MG
a
3091 1MAGNESIUM ION
lig 120
MG
a
3092 1MAGNESIUM ION
lig 121
MG
a
3093 1MAGNESIUM ION
lig 122
MG
a
3094 1MAGNESIUM ION
lig 123
MG
a
3095 1MAGNESIUM ION
lig 124
MG
a
3096 1MAGNESIUM ION
lig 125
MG
a
3097 1MAGNESIUM ION
lig 126
MG
a
3098 1MAGNESIUM ION
lig 127
MG
a
3099 1MAGNESIUM ION
lig 128
MG
a
3100 1MAGNESIUM ION
lig 129
MG
a
3101 1MAGNESIUM ION
lig 130
MG
a
3102 1MAGNESIUM ION
lig 131
MG
a
3103 1MAGNESIUM ION
lig 132
MG
a
3104 1MAGNESIUM ION
lig 133
MG
a
3105 1MAGNESIUM ION
lig 134
MG
a
3106 1MAGNESIUM ION
lig 135
MG
a
3107 1MAGNESIUM ION
lig 136
MG
a
3108 1MAGNESIUM ION
lig 137
MG
a
3109 1MAGNESIUM ION
lig 138
MG
a
3110 1MAGNESIUM ION
lig 139
MG
a
3111 1MAGNESIUM ION
lig 140
MG
a
3112 1MAGNESIUM ION
lig 141
MG
a
3113 1MAGNESIUM ION
lig 142
MG
a
3114 1MAGNESIUM ION
lig 143
MG
a
3115 1MAGNESIUM ION
lig 144
MG
a
3116 1MAGNESIUM ION
lig 145
MG
a
3117 1MAGNESIUM ION
lig 146
MG
a
3118 1MAGNESIUM ION
lig 147
MG
a
3119 1MAGNESIUM ION
lig 148
MG
a
3120 1MAGNESIUM ION
lig 149
MG
a
3121 1MAGNESIUM ION
lig 150
MG
a
3122 1MAGNESIUM ION
lig 151
MG
a
3123 1MAGNESIUM ION
lig 152
MG
a
3124 1MAGNESIUM ION
lig 153
MG
a
3125 1MAGNESIUM ION
lig 154
MG
a
3126 1MAGNESIUM ION
lig 155
MG
a
3127 1MAGNESIUM ION
lig 156
MG
a
3128 1MAGNESIUM ION
lig 157
MG
a
3129 1MAGNESIUM ION
lig 158
MG
a
3130 1MAGNESIUM ION
lig 159
MG
a
3131 1MAGNESIUM ION
lig 160
MG
a
3132 1MAGNESIUM ION
lig 161
MG
a
3133 1MAGNESIUM ION
lig 162
MG
a
3134 1MAGNESIUM ION
lig 163
MG
a
3135 1MAGNESIUM ION
lig 164
MG
a
3136 1MAGNESIUM ION
lig 165
MG
a
3137 1MAGNESIUM ION
lig 166
MG
a
3138 1MAGNESIUM ION
lig 167
MG
a
3139 1MAGNESIUM ION
lig 168
MG
a
3140 1MAGNESIUM ION
lig 169
MG
a
3141 1MAGNESIUM ION
lig 170
MG
a
3142 1MAGNESIUM ION
lig 171
MG
a
3143 1MAGNESIUM ION
lig 172
MG
a
3144 1MAGNESIUM ION
lig 173
MG
a
3145 1MAGNESIUM ION
lig 174
MG
a
3146 1MAGNESIUM ION
lig 175
MG
a
3147 1MAGNESIUM ION
lig 176
MG
a
3148 1MAGNESIUM ION
lig 177
MG
a
3149 1MAGNESIUM ION
lig 178
MG
a
3150 1MAGNESIUM ION
lig 179
MG
a
3151 1MAGNESIUM ION
lig 180
MG
a
3152 1MAGNESIUM ION
lig 181
MG
a
3153 1MAGNESIUM ION
lig 182
MG
a
3154 1MAGNESIUM ION
lig 183
MG
a
3155 1MAGNESIUM ION
lig 184
MG
a
3156 1MAGNESIUM ION
lig 185
MG
a
3157 1MAGNESIUM ION
lig 186
MG
a
3158 1MAGNESIUM ION
lig 187
MG
a
3159 1MAGNESIUM ION
lig 188
MG
a
3160 1MAGNESIUM ION
lig 189
MG
a
3161 1MAGNESIUM ION
lig 190
MG
a
3162 1MAGNESIUM ION
lig 191
MG
a
3163 1MAGNESIUM ION
lig 192
MG
a
3164 1MAGNESIUM ION
lig 193
MG
a
3165 1MAGNESIUM ION
lig 194
MG
a
3166 1MAGNESIUM ION
lig 195
MG
a
3167 1MAGNESIUM ION
lig 196
MG
a
3168 1MAGNESIUM ION
lig 197
MG
a
3169 1MAGNESIUM ION
lig 198
MG
a
3170 1MAGNESIUM ION
lig 199
MG
a
3171 1MAGNESIUM ION
lig 200
MG
a
3172 1MAGNESIUM ION
lig 201
MG
a
3173 1MAGNESIUM ION
lig 202
MG
a
3174 1MAGNESIUM ION
lig 203
MG
a
3175 1MAGNESIUM ION
lig 204
MG
a
3176 1MAGNESIUM ION
lig 205
MG
a
3177 1MAGNESIUM ION
lig 206
MG
a
3178 1MAGNESIUM ION
lig 207
MG
a
3179 1MAGNESIUM ION
lig 208
MG
a
3180 1MAGNESIUM ION
lig 209
MG
a
3181 1MAGNESIUM ION
lig 210
MG
a
3182 1MAGNESIUM ION
lig 211
MG
a
3183 1MAGNESIUM ION
lig 212
MG
a
3184 1MAGNESIUM ION
lig 213
MG
a
3185 1MAGNESIUM ION
lig 214
MG
a
3186 1MAGNESIUM ION
lig 215
MG
a
3187 1MAGNESIUM ION
lig 216
MG
a
3188 1MAGNESIUM ION
lig 217
MG
a
3189 1MAGNESIUM ION
lig 218
MG
a
3190 1MAGNESIUM ION
lig 219
K
a
3191 1POTASSIUM ION
lig 220
K
a
3192 1POTASSIUM ION
lig 221
K
a
3193 1POTASSIUM ION
lig 222
K
a
3194 1POTASSIUM ION
lig 223
K
a
3195 1POTASSIUM ION
lig 224
K
a
3196 1POTASSIUM ION
lig 225
K
a
3197 1POTASSIUM ION
lig 226
K
a
3198 1POTASSIUM ION
lig 227
K
a
3199 1POTASSIUM ION
lig 228
K
a
3200 1POTASSIUM ION
lig 229
K
a
3201 1POTASSIUM ION
lig 230
K
a
3202 1POTASSIUM ION
lig 231
K
a
3203 1POTASSIUM ION
lig 232
K
a
3204 1POTASSIUM ION
lig 233
K
a
3205 1POTASSIUM ION
lig 234
K
a
3206 1POTASSIUM ION
lig 235
K
a
3207 1POTASSIUM ION
lig 236
K
a
3208 1POTASSIUM ION
lig 237
K
a
3209 1POTASSIUM ION
lig 238
K
a
3210 1POTASSIUM ION
lig 239
K
a
3211 1POTASSIUM ION
lig 240
K
a
3212 1POTASSIUM ION
lig 241
K
a
3213 1POTASSIUM ION
lig 242
K
a
3214 1POTASSIUM ION
lig 243
K
a
3215 1POTASSIUM ION
lig 244
K
a
3216 1POTASSIUM ION
lig 245
K
a
3217 1POTASSIUM ION
lig 246
K
a
3218 1POTASSIUM ION
lig 247
K
a
3219 1POTASSIUM ION
lig 248
K
a
3220 1POTASSIUM ION
lig 249
K
a
3221 1POTASSIUM ION
lig 250
K
a
3222 1POTASSIUM ION
lig 251
K
a
3223 1POTASSIUM ION
lig 252
K
a
3224 1POTASSIUM ION
lig 253
K
a
3225 1POTASSIUM ION
lig 254
K
a
3226 1POTASSIUM ION
lig 255
K
a
3227 1POTASSIUM ION
lig 256
K
a
3228 1POTASSIUM ION
lig 257
K
a
3229 1POTASSIUM ION
lig 258
K
a
3230 1POTASSIUM ION
lig 259
K
a
3231 1POTASSIUM ION
lig 260
K
a
3232 1POTASSIUM ION
lig 261
K
a
3233 1POTASSIUM ION
lig 262
K
a
3234 1POTASSIUM ION
lig 263
K
a
3235 1POTASSIUM ION
lig 264
K
a
3236 1POTASSIUM ION
lig 265
K
a
3237 1POTASSIUM ION
lig 266
K
a
3238 1POTASSIUM ION
lig 267
K
a
3239 1POTASSIUM ION
lig 268
K
a
3240 1POTASSIUM ION
lig 269
K
a
3241 1POTASSIUM ION
lig 270
K
a
3242 1POTASSIUM ION
lig 271
K
a
3243 1POTASSIUM ION
lig 272
K
a
3244 1POTASSIUM ION
lig 273
K
a
3245 1POTASSIUM ION
lig 274
K
a
3246 1POTASSIUM ION
lig 275
K
a
3247 1POTASSIUM ION
lig 276
K
a
3248 1POTASSIUM ION
lig 277
K
a
3249 1POTASSIUM ION
lig 278
K
a
3250 1POTASSIUM ION
lig 279
K
a
3251 1POTASSIUM ION
lig 280
K
a
3252 1POTASSIUM ION
lig 281
K
a
3253 1POTASSIUM ION
lig 282
K
a
3254 1POTASSIUM ION
lig 283
K
a
3255 1POTASSIUM ION
lig 284
K
a
3256 1POTASSIUM ION
lig 285
K
a
3257 1POTASSIUM ION
lig 286
K
a
3258 1POTASSIUM ION
lig 287
K
a
3259 1POTASSIUM ION
lig 288
K
a
3260 1POTASSIUM ION
lig 289
K
a
3261 1POTASSIUM ION
lig 290
K
a
3262 1POTASSIUM ION
lig 291
K
a
3263 1POTASSIUM ION
lig 292
K
a
3264 1POTASSIUM ION
lig 293
K
a
3265 1POTASSIUM ION
lig 294
K
a
3266 1POTASSIUM ION
lig 295
K
a
3267 1POTASSIUM ION
lig 296
K
a
3268 1POTASSIUM ION
lig 297
MG
a
3269 1MAGNESIUM ION
lig 298
MG
a
3270 1MAGNESIUM ION
lig 299
MG
a
3271 1MAGNESIUM ION
lig 300
MG
a
3272 1MAGNESIUM ION
lig 301
MG
a
3273 1MAGNESIUM ION
lig 302
MG
a
3274 1MAGNESIUM ION
lig 303
MG
a
3275 1MAGNESIUM ION
lig 304
MG
a
3276 1MAGNESIUM ION
lig 305
MG
a
3277 1MAGNESIUM ION
lig 306
MG
a
3278 1MAGNESIUM ION
lig 307
MG
a
3279 1MAGNESIUM ION
lig 308
MG
a
3280 1MAGNESIUM ION
lig 309
MG
a
3281 1MAGNESIUM ION
lig 310
MG
a
3282 1MAGNESIUM ION
lig 311
MG
a
3283 1MAGNESIUM ION
lig 312
MG
a
3284 1MAGNESIUM ION
lig 313
MG
a
3285 1MAGNESIUM ION
lig 314
MG
a
3286 1MAGNESIUM ION
lig 315
MG
a
3287 1MAGNESIUM ION
lig 316
MG
a
3288 1MAGNESIUM ION
lig 317
MG
a
3289 1MAGNESIUM ION
lig 318
MG
a
3290 1MAGNESIUM ION
lig 319
MG
a
3291 1MAGNESIUM ION
lig 320
MG
a
3292 1MAGNESIUM ION
lig 321
MG
a
3293 1MAGNESIUM ION
lig 322
MG
a
3294 1MAGNESIUM ION
lig 323
MG
a
3295 1MAGNESIUM ION
lig 324
MG
a
3296 1MAGNESIUM ION
lig 325
MG
a
3297 1MAGNESIUM ION
lig 326
MG
a
3298 1MAGNESIUM ION
lig 327
MG
a
3299 1MAGNESIUM ION
lig 328
MG
a
3300 1MAGNESIUM ION
lig 329
MG
a
3301 1MAGNESIUM ION
lig 330
MG
a
3302 1MAGNESIUM ION
lig 331
MG
a
3303 1MAGNESIUM ION
lig 332
MG
a
3304 1MAGNESIUM ION
lig 333
MG
a
3305 1MAGNESIUM ION
lig 334
MG
a
3306 1MAGNESIUM ION
lig 335
MG
a
3307 1MAGNESIUM ION
lig 336
MG
a
3308 1MAGNESIUM ION
lig 337
MG
a
3309 1MAGNESIUM ION
lig 338
MG
a
3310 1MAGNESIUM ION
lig 339
MG
a
3311 1MAGNESIUM ION
lig 340
MG
a
3312 1MAGNESIUM ION
lig 341
MG
a
3313 1MAGNESIUM ION
lig 342
MG
a
3314 1MAGNESIUM ION
lig 343
MG
a
3315 1MAGNESIUM ION
lig 344
MG
a
3316 1MAGNESIUM ION
lig 345
MG
a
3317 1MAGNESIUM ION
lig 346
MG
a
3318 1MAGNESIUM ION
lig 347
MG
a
3319 1MAGNESIUM ION
lig 348
MG
a
3320 1MAGNESIUM ION
lig 349
MG
a
3321 1MAGNESIUM ION
lig 350
MG
a
3322 1MAGNESIUM ION
lig 351
MG
a
3323 1MAGNESIUM ION
lig 352
MG
a
3324 1MAGNESIUM ION
lig 353
MG
a
3325 1MAGNESIUM ION
lig 354
MG
a
3326 1MAGNESIUM ION
lig 355
MG
a
3327 1MAGNESIUM ION
lig 356
K
a
3328 1POTASSIUM ION
lig 357
MG
b
201 1MAGNESIUM ION
lig 358
MG
b
202 1MAGNESIUM ION
lig 359
MG
b
203 1MAGNESIUM ION
lig 360
MG
b
204 1MAGNESIUM ION
lig 361
MG
c
301 1MAGNESIUM ION
lig 362
K
c
302 1POTASSIUM ION
lig 363
K
c
303 1POTASSIUM ION
lig 364
K
c
304 1POTASSIUM ION
lig 365
K
c
305 1POTASSIUM ION
lig 366
MG
d
301 1MAGNESIUM ION
lig 367
K
e
301 1POTASSIUM ION
lig 368
ZN
f
201 1ZINC ION
lig 369
MG
p
201 1MAGNESIUM ION
lig 370
K
t
201 1POTASSIUM ION
lig 371
MG
z
201 1MAGNESIUM ION