4PV9 Crystal Structure of H2Kb-Q600V complex date
authors Twist, K.A., Rossjohn, J., Gras, S.
compound source
symmetry
R_factor
R_Free 0.2179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ABA, ACT, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B


Primary referenceStructural and functional correlates of enhanced antiviral immunity generated by heteroclitic CD8 T cell epitopes., Trujillo JA, Gras S, Twist KA, Croft NP, Channappanavar R, Rossjohn J, Purcell AW, Perlman S, J Immunol. 2014 Jun 1;192(11):5245-56. doi: 10.4049/jimmunol.1400111. Epub 2014, May 2. PMID:24795457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (4pv9.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (4pv9.pdb2.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4PV9
  • CSU: Contacts of Structural Units for 4PV9
  • Structure Factors (1147 Kb)
  • Retrieve 4PV9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PV9 from S2C, [Save to disk]
  • Re-refined 4pv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PV9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PV9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PV9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pv9_B] [4pv9_E] [4pv9_C] [4pv9_F] [4pv9_D] [4pv9_A] [4pv9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PV9: [IGc1 ] by SMART
  • Other resources with information on 4PV9
  • Community annotation for 4PV9 at PDBWiki (http://pdbwiki.org)

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