7CZ0 Fluorescent Protein date Sep 06, 2020
title Crystal Structure Of A Thermostable Green Fluorescent Protei With A Synthetic Nanobody (Sb92)
authors H.Cai, H.Yao, T.Li, C.Hutter, Y.Tang, Y.Li, M.Seeger, D.Li
compound source
Molecule: Thermostable Green Fluorescent Protein (Tgp)
Chain: A, B, C, D
Engineered: Yes
Other_details: This Is A Green Fluorescent Protein. Gln63 T In The Codon-Based Sequence Forms The Fluorophore Crq.;
 Organism_scientific: Galaxea Fascicularis
Organism_taxid: 46745
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pec

Molecule: Synthetic Nanobody (Sybody) 92 Recognizing The Th Green Fluorescent Protein (Tgp);
Chain: E, F, G, H
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pec
symmetry Space Group: P 21 21 2
R_factor 0.202 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.245 130.154 171.453 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.77 Å
ligand ACT, CAC, CAD, CRQ, GOL enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (7cz0.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (7cz0.pdb2.gz) 57 Kb
  • Biological Unit Coordinates (7cz0.pdb3.gz) 56 Kb
  • Biological Unit Coordinates (7cz0.pdb4.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 7CZ0
  • CSU: Contacts of Structural Units for 7CZ0
  • Structure Factors (2207 Kb)
  • Retrieve 7CZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7CZ0 from S2C, [Save to disk]
    • View 7CZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7CZ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7cz0_B] [7cz0_H] [7cz0_D] [7cz0_A] [7cz0_C] [7cz0_E] [7cz0_G] [7cz0_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 7CZ0
  • Community annotation for 7CZ0 at PDBWiki (http://pdbwiki.org)

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