5W4S Transferase date Jun 12, 2017
title Solution Structure Of C2 Domain From Protein Kinase C Alpha Complex With Calcium And V5-Phm Peptide
authors Y.Yang, T.I.Igumenova
compound source
Molecule: Protein Kinase C Alpha Type
Chain: A
Fragment: C2 Domain Residues 155-293
Synonym: Pkc-Alpha
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Prkca, Pkca
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: V5-Phm Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116
methodSolution NMR
enzyme Transferase E.C. BRENDA

Primary referenceStructural Basis of Protein Kinase Calpha Regulation by the C-Terminal Tail., Yang Y, Shu C, Li P, Igumenova TI, Biophys J. 2018 Apr 10;114(7):1590-1603. doi: 10.1016/j.bpj.2017.12.030. PMID:29642029
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (919 Kb) [Save to disk]
  • Biological Unit Coordinates (5w4s.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 5W4S
  • Original NMR restraints for 5W4S from PDB
  • Retrieve 5W4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W4S from S2C, [Save to disk]
  • View 5W4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W4S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w4s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w4s_A] [5w4s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W4S
  • Community annotation for 5W4S at PDBWiki (http://pdbwiki.org)

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