1F5Q	Transferase	date	Jun 15, 2000
title	Crystal Structure Of Murine Gamma Herpesvirus Cyclin Complex Human Cyclin Dependent Kinase 2
authors	G.L.Card, P.Knowles, H.Laman, N.Jones, N.Q.Mcdonald
compound		source
Molecule: Cyclin Dependent Kinase 2 Chain: A, C Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Insect Cells Expression_system_vector: Baculovirus
Molecule: Gamma Herpesvirus Cyclin Chain: B, D Engineered: Yes		Organism_scientific: Murid Herpesvirus 4 Organism_common: Murine Herpesvirus 68 Organism_taxid: 33708 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-Kg
symmetry	Space Group: P 1 21 1	R_factor 0.234 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.590 73.450 107.670 90.00 102.18 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CL	enzyme	Transferase E.C.2.7.1 BRENDA
related structures	by homologous chain: 1H1Q, 1PXN
Gene Ontology	Chain Function Process Component A, C
Primary reference	Crystal structure of a gamma-herpesvirus cyclin-cdk complex., Card GL, Knowles P, Laman H, Jones N, McDonald NQ, EMBO J 2000 Jun 15;19(12):2877-88. PMID:10856233

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (1f5q.pdb1.gz) 89 Kb Biological Unit Coordinates (1f5q.pdb2.gz) 86 Kb LPC: Ligand-Protein Contacts for 1F5Q CSU: Contacts of Structural Units for 1F5Q Likely Quarternary Molecular Structure file(s) for 1F5Q Retrieve 1F5Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F5Q from S2C, [Save to disk]

View 1F5Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F5Q

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F5Q, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f5qa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f5qb2, region B:147-252 [Jmol] [rasmolscript] [script source]     - Domain d1f5qb1, region B:6-146 [Jmol] [rasmolscript] [script source]     - Domain d1f5qc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1f5qd2, region D:147-252 [Jmol] [rasmolscript] [script source]     - Domain d1f5qd1, region D:5-146 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f5q_B] [1f5q_A] [1f5q_C] [1f5q] [1f5q_D] SWISS-PROT database: [P24941] [P89883] Domain organization of [CDK2_HUMAN] [P89883_MHV68] by SWISSPFAM Domains found in 1F5Q: [CYCLIN] [S_TKc ] by SMART

Other resources with information on 1F5Q

Community annotation for 1F5Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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