1FSK Immune System date Sep 11, 2000
title Complex Formation Between A Fab Fragment Of A Monoclonal Igg And The Major Allergen From Birch Pollen Bet V 1
authors O.Mirza, A.Henriksen, H.Ipsen, J.Larsen, M.Wissenbach, M.Spangfor M.Gajhede
compound source
Molecule: Major Pollen Allergen Bet V 1-A
Chain: A, D, G, J
Synonym: Bet V I-A, Betvi Allergen
Engineered: Yes
Organism_scientific: Betula Pendula
Organism_common: European White Birch
Organism_taxid: 3505
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Immunoglobulin Kappa Light Chain
Chain: B, E, H, K
Synonym: Bv16 Fab-Fragment, Kappa Mopc21 Coding Sequence
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Balbc Mice
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Antibody Heavy Chain Fab
Chain: C, F, I, L
Synonym: Heavy Chain Of The Monoclonal Antibody Mst2
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Balbc Mice
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.253 R_Free 0.285
length a length b length c angle alpha angle beta angle gamma
91.653 99.145 108.905 105.70 98.32 97.62
method X-Ray Diffractionresolution 2.90 Å
related structures by homologous chain: 1AIF, 1BTV, 1OB1, 1QMR, 1RZI, 2FGW
A, J, D, G
  • protein phosphatase inhibito...

  • H, K, E, B

    Primary referenceDominant epitopes and allergic cross-reactivity: complex formation between a Fab fragment of a monoclonal murine IgG antibody and the major allergen from birch pollen Bet v 1., Mirza O, Henriksen A, Ipsen H, Larsen JN, Wissenbach M, Spangfort MD, Gajhede M, J Immunol 2000 Jul 1;165(1):331-8. PMID:10861069
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (378 Kb) [Save to disk]
  • Biological Unit Coordinates (1fsk.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (1fsk.pdb2.gz) 98 Kb
  • Biological Unit Coordinates (1fsk.pdb3.gz) 99 Kb
  • Biological Unit Coordinates (1fsk.pdb4.gz) 99 Kb
  • CSU: Contacts of Structural Units for 1FSK
  • Likely Quarternary Molecular Structure file(s) for 1FSK
  • Structure Factors (719 Kb)
  • Retrieve 1FSK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FSK from S2C, [Save to disk]
  • Re-refined 1fsk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FSK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FSK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FSK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fska_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fskb1, region B:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1fskb2, region B:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1fskc1, region C:1-118 [Jmol] [rasmolscript] [script source]
        - Domain d1fskc2, region C:119-220 [Jmol] [rasmolscript] [script source]
        - Domain d1fskd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fske1, region E:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1fske2, region E:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1fskf1, region F:1-118 [Jmol] [rasmolscript] [script source]
        - Domain d1fskf2, region F:119-220 [Jmol] [rasmolscript] [script source]
        - Domain d1fskg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1fskh1, region H:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1fskh2, region H:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1fski1, region I:1-118 [Jmol] [rasmolscript] [script source]
        - Domain d1fski2, region I:119-220 [Jmol] [rasmolscript] [script source]
        - Domain d1fskj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1fskk1, region K:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1fskk2, region K:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1fskl1, region L:1-118 [Jmol] [rasmolscript] [script source]
        - Domain d1fskl2, region L:119-220 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fsk_C] [1fsk_A] [1fsk_I] [1fsk] [1fsk_D] [1fsk_K] [1fsk_B] [1fsk_H] [1fsk_E] [1fsk_F] [1fsk_G] [1fsk_L] [1fsk_J]
  • SWISS-PROT database: [P15494] [P01837]
  • Domain organization of [BEV1A_BETVE] [IGKC_MOUSE] by SWISSPFAM
  • Domains found in 1FSK: [IG_like] [IGv ] by SMART
  • Other resources with information on 1FSK
  • Community annotation for 1FSK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FSK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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