5A24 Crystal structure of Dionain-1, the major endopeptidase in the Venus flytrap digestive juice date
authors Risor, M.W., Thomsen, L.R., Sanggaard, K.W., Nielsen, T.A., Thogersen, I.B., Lukassen, M.V., Rossen, L., Garcia-Ferrer, I., Guevara, T., Meinjohanns, E., Nielsen, N.C., Gomis-Ruth, F.X., Enghild, J.J.
compound source
symmetry
R_factor
R_Free 0.1720
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand E64, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEnzymatic and structural characterization of the major endopeptidase in the Venus flytrap digestion fluid., Risor MW, Thomsen LR, Sanggaard KW, Nielsen TA, Thogersen IB, Lukassen MV, Rossen L, Garcia-Ferrer I, Guevara T, Scavenius C, Meinjohanns E, Gomis-Ruth FX, Enghild JJ, J Biol Chem. 2015 Dec 1. pii: jbc.M115.672550. PMID:26627834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5a24.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 5A24
  • CSU: Contacts of Structural Units for 5A24
  • Structure Factors (280 Kb)
  • Retrieve 5A24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A24 from S2C, [Save to disk]
  • Re-refined 5a24 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A24 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A24
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a24_A] [5a24]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A24: [Pept_C1 ] by SMART
    • Other resources with information on 5A24
  • Community annotation for 5A24 at PDBWiki (http://pdbwiki.org)

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