6H5H Unknown Function date Jul 24, 2018
title A Computationally Designed Drp Lyase Domain Reconstructed Fr Heterologous Fragments
authors M.Elgamacy, M.Coles, A.N.Lupas
compound source
Molecule: Polb4
Chain: A
Engineered: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
methodSolution NMR
Primary referenceAsymmetric protein design from conserved supersecondary structures., ElGamacy M, Coles M, Lupas A, J Struct Biol. 2018 Dec;204(3):380-387. doi: 10.1016/j.jsb.2018.10.010. Epub 2018, Oct 26. PMID:30558718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (403 Kb) [Save to disk]
  • Biological Unit Coordinates (6h5h.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 6H5H
  • Original NMR restraints for 6H5H from PDB
  • Retrieve 6H5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6H5H from S2C, [Save to disk]
  • View 6H5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6H5H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6h5h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6h5h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6H5H
  • Community annotation for 6H5H at PDBWiki (http://pdbwiki.org)

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