3LTI Crystal structure of the Escherichia coli RNA polymerase beta subunit beta2-betai4 domains date
authors Darst, S.A., Opalka, N.
compound source
symmetry
R_factor
R_Free .22955
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand MLY, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComplete structural model of Escherichia coli RNA polymerase from a hybrid approach., Opalka N, Brown J, Lane WJ, Twist KA, Landick R, Asturias FJ, Darst SA, PLoS Biol. 2010 Sep 14;8(9). pii: e1000483. PMID:20856905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3lti.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3LTI
  • CSU: Contacts of Structural Units for 3LTI
  • Structure Factors (350 Kb)
  • Retrieve 3LTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LTI from S2C, [Save to disk]
  • Re-refined 3lti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LTI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LTI, from MSDmotif at EBI
  • Fold representative 3lti from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lti] [3lti_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LTI
  • Community annotation for 3LTI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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