7EGA | Transcription | date | Mar 24, 2021 |
||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
title | Tfiid-Based Intermediate Pic On Puma Promoter | ||||||||||||||
authors | X.Chen, Z.Wu, H.Hou, Y.Qi, X.Wang, J.Li, Y.Xu | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 1 Chain: A Synonym: Cell Cycle Gene 1 Protein,Tbp-Associated Factor 25 P250,Transcription Initiation Factor Tfiid 250 Kda Subunit, 250,Tafii-250,Tafii250; Ec: 2.3.1.48,2.7.11.1 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf1, Ba2r, Ccg1, Ccgs, Taf2a Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 2 Chain: B Synonym: 150 Kda Cofactor Of Initiator Function,Rna Polymer Tbp-Associated Factor Subunit B,Tbp-Associated Factor 150 K Transcription Initiation Factor Tfiid 150 Kda Subunit,Taf(I Tafii-150,Tafii150; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf2, Cif150, Taf2b Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 4 Chain: D, d Synonym: Rna Polymerase II Tbp-Associated Factor Subunit C, Associated Factor 4,Transcription Initiation Factor Tfiid 1 Subunit,Taf(II)130,Tafii-130,Tafii130,Transcription Initiat Tfiid 135 Kda Subunit,Taf(II)135,Tafii-135,Tafii135; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf4, Taf2c, Taf2c1, Taf4a, Tafii130, Tafii135 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 5 Chain: E, e Synonym: Transcription Initiation Factor Tfiid 100 Kda Subu Taf(II)100,Tafii-100,Tafii100; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf5, Taf2d Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 6 Chain: F, f Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit,Taf(II 70,Tafii70,Transcription Initiation Factor Tfiid 80 Kda Sub Taf(II)80,Tafii-80,Tafii80; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf6, Taf2e, Tafii70 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 7 Chain: G Synonym: Rna Polymerase II Tbp-Associated Factor Subunit F, Transcription Initiation Factor Tfiid 55 Kda Subunit,Taf(II 55,Tafii55; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf7, Taf2f, Tafii55 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 8 Chain: H Synonym: Protein Taube Nuss,Tbp-Associated Factor 43 Kda,Tb Associated Factor 8,Transcription Initiation Factor Tfiid 4 Subunit,Tafii-43,Tafii43,Htafii43; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf8, Tafii43, Tbn Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 9 Chain: I, I Synonym: Rna Polymerase II Tbp-Associated Factor Subunit G, Transcription Initiation Factor Tfiid 31 Kda Subunit,Tafii- Tafii31,Transcription Initiation Factor Tfiid 32 Kda Subuni 32,Tafii32; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf9, Taf2g, Tafii31 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 10 Chain: J, j Synonym: Staf28,Transcription Initiation Factor Tfiid 30 Kd Taf(II)30,Tafii-30,Tafii30; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf10, Taf2a, Taf2h, Tafii30 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 12 Chain: L, l Synonym: Transcription Initiation Factor Tfiid 2015 Kda Su Tafii-20tafii-15,Tafii20tafii15; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf12, Taf15, Taf2j, Tafii20 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Iia Subunit 2 Chain: O Synonym: General Transcription Factor Iia Subunit 2,Tfiia P Subunit,Tfiia-12,Tfiias,Transcription Initiation Factor Iia Chain,Tfiia-Gamma; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2a2, Tf2a2 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Tata-Box-Binding Protein Chain: P Synonym: Tata Sequence-Binding Protein,Tata-Binding Factor, Factor,Transcription Initiation Factor Tfiid Tbp Subunit; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tbp, Gtf2d1, Tf2d, Tfiid Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Iia Subunit 1 Chain: Q Synonym: General Transcription Factor Iia Subunit 1,Tfiial, Transcription Initiation Factor Tfiia 42 Kda Subunit,Tfiia- Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2a1, Tf2a1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Iib Chain: R Synonym: General Transcription Factor Tfiib,S300-II Ec: 2.3.1.48 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2b, Tf2b, Tfiib Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: General Transcription Factor Iif Subunit 1 Chain: S Synonym: General Transcription Factor Iif 74 Kda Subunit, Transcription Initiation Factor Iif Subunit Alpha,Tfiif-Alp Transcription Initiation Factor Rap74; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2f1, Rap74 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: General Transcription Factor Iif Subunit 2 Chain: T Synonym: Atp-Dependent Helicase Gtf2f2,General Transcriptio Iif 30 Kda Subunit,Transcription Initiation Factor Iif Subu Tfiif-Beta,Transcription Initiation Factor Rap30; Ec: 3.6.4.12 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2f2, Rap30 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: General Transcription Factor Iie Subunit 1 Chain: U Synonym: General Transcription Factor Iie 56 Kda Subunit, Transcription Initiation Factor Iie Subunit Alpha,Tfiie-Alp Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2e1, Tf2e1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Iie Subunit Beta Chain: V Synonym: Tfiie-Beta,General Transcription Factor Iie Subuni Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gtf2e2, Tf2e2 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 3 Chain: c Synonym: 140 Kda Tata Box-Binding Protein-Associated Factor Associated Factor 3,Transcription Initiation Factor Tfiid 1 Subunit,Taf(II)140,Taf140,Tafii-140,Tafii140; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf3 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 11 Chain: k Synonym: Tfiid Subunit P30-Beta,Transcription Initiation Fa 28 Kda Subunit,Taf(II)28,Tafii-28,Tafii28; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf11, Taf2i, Pro2134 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Transcription Initiation Factor Tfiid Subunit 13 Chain: m Synonym: Transcription Initiation Factor Tfiid 18 Kda Subun Taf(II)18,Tafii-18,Tafii18; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Taf13, Taf2k, Tafii18 Expression_system: Homo Sapiens Expression_system_taxid: 9606 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Chain: o Ec: 2.7.7.6 |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase Subunit Beta Chain: p Ec: 2.7.7.6 |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb3 Chain: q |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb4 Chain: r Synonym: Dna-Directed Rna Polymerase II Subunit Rpb4 Isofor |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit E Chain: s Synonym: Rpb5 Homolog |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit F Chain: t Synonym: Dna-Directed Rna Polymerases I,II,And III Subunit Rpb6 Homolog; |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: v |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb9 Chain: w Synonym: Rna Polymerase II Subunit B9,Dna-Directed Rna Poly Subunit I,Rna Polymerase II 14.5 Kda Subunit,Rpb14.5; |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Rpb10 Chain: x |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Rna_pol_l_2 Domain-Containing Protein Chain: y |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Rpb12 Chain: z |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
Molecule: Dna (85-Mer) Chain: X Engineered: Yes |
Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 | ||||||||||||||
Molecule: Dna (85-Mer) Chain: Y Engineered: Yes |
Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb7 Chain: u |
Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 | ||||||||||||||
symmetry | Space Group: P 1 |
| |||||||||||||
crystal cell |
| ||||||||||||||
method | Electron Microscopy | resolution | 4.10 Å | ||||||||||||
ligand | MG, ZN | enzyme | Transferase E.C.2.3.1.48 BRENDA |
Data retrieval |
View 7EGA in 3D |
Visual 3D analysis of 7EGA |
Structure-derived information |
Sequence-derived information |
Other resources with information on 7EGA |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |