7EGA Transcription date Mar 24, 2021
title Tfiid-Based Intermediate Pic On Puma Promoter
authors X.Chen, Z.Wu, H.Hou, Y.Qi, X.Wang, J.Li, Y.Xu
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 1
Chain: A
Synonym: Cell Cycle Gene 1 Protein,Tbp-Associated Factor 25 P250,Transcription Initiation Factor Tfiid 250 Kda Subunit, 250,Tafii-250,Tafii250;
Ec: 2.3.1.48,2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf1, Ba2r, Ccg1, Ccgs, Taf2a
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 2
Chain: B
Synonym: 150 Kda Cofactor Of Initiator Function,Rna Polymer Tbp-Associated Factor Subunit B,Tbp-Associated Factor 150 K Transcription Initiation Factor Tfiid 150 Kda Subunit,Taf(I Tafii-150,Tafii150;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf2, Cif150, Taf2b
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 4
Chain: D, d
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit C, Associated Factor 4,Transcription Initiation Factor Tfiid 1 Subunit,Taf(II)130,Tafii-130,Tafii130,Transcription Initiat Tfiid 135 Kda Subunit,Taf(II)135,Tafii-135,Tafii135;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf4, Taf2c, Taf2c1, Taf4a, Tafii130, Tafii135
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 5
Chain: E, e
Synonym: Transcription Initiation Factor Tfiid 100 Kda Subu Taf(II)100,Tafii-100,Tafii100;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf5, Taf2d
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 6
Chain: F, f
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit E, Transcription Initiation Factor Tfiid 70 Kda Subunit,Taf(II 70,Tafii70,Transcription Initiation Factor Tfiid 80 Kda Sub Taf(II)80,Tafii-80,Tafii80;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf6, Taf2e, Tafii70
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 7
Chain: G
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit F, Transcription Initiation Factor Tfiid 55 Kda Subunit,Taf(II 55,Tafii55;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf7, Taf2f, Tafii55
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 8
Chain: H
Synonym: Protein Taube Nuss,Tbp-Associated Factor 43 Kda,Tb Associated Factor 8,Transcription Initiation Factor Tfiid 4 Subunit,Tafii-43,Tafii43,Htafii43;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf8, Tafii43, Tbn
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 9
Chain: I, I
Synonym: Rna Polymerase II Tbp-Associated Factor Subunit G, Transcription Initiation Factor Tfiid 31 Kda Subunit,Tafii- Tafii31,Transcription Initiation Factor Tfiid 32 Kda Subuni 32,Tafii32;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf9, Taf2g, Tafii31
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 10
Chain: J, j
Synonym: Staf28,Transcription Initiation Factor Tfiid 30 Kd Taf(II)30,Tafii-30,Tafii30;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf10, Taf2a, Taf2h, Tafii30
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 12
Chain: L, l
Synonym: Transcription Initiation Factor Tfiid 2015 Kda Su Tafii-20tafii-15,Tafii20tafii15;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf12, Taf15, Taf2j, Tafii20
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Iia Subunit 2
Chain: O
Synonym: General Transcription Factor Iia Subunit 2,Tfiia P Subunit,Tfiia-12,Tfiias,Transcription Initiation Factor Iia Chain,Tfiia-Gamma;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2a2, Tf2a2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Tata-Box-Binding Protein
Chain: P
Synonym: Tata Sequence-Binding Protein,Tata-Binding Factor, Factor,Transcription Initiation Factor Tfiid Tbp Subunit;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbp, Gtf2d1, Tf2d, Tfiid
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Iia Subunit 1
Chain: Q
Synonym: General Transcription Factor Iia Subunit 1,Tfiial, Transcription Initiation Factor Tfiia 42 Kda Subunit,Tfiia-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2a1, Tf2a1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Iib
Chain: R
Synonym: General Transcription Factor Tfiib,S300-II
Ec: 2.3.1.48
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2b, Tf2b, Tfiib
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: General Transcription Factor Iif Subunit 1
Chain: S
Synonym: General Transcription Factor Iif 74 Kda Subunit, Transcription Initiation Factor Iif Subunit Alpha,Tfiif-Alp Transcription Initiation Factor Rap74;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2f1, Rap74
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: General Transcription Factor Iif Subunit 2
Chain: T
Synonym: Atp-Dependent Helicase Gtf2f2,General Transcriptio Iif 30 Kda Subunit,Transcription Initiation Factor Iif Subu Tfiif-Beta,Transcription Initiation Factor Rap30;
Ec: 3.6.4.12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2f2, Rap30
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: General Transcription Factor Iie Subunit 1
Chain: U
Synonym: General Transcription Factor Iie 56 Kda Subunit, Transcription Initiation Factor Iie Subunit Alpha,Tfiie-Alp
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2e1, Tf2e1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Iie Subunit Beta
Chain: V
Synonym: Tfiie-Beta,General Transcription Factor Iie Subuni
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtf2e2, Tf2e2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 3
Chain: c
Synonym: 140 Kda Tata Box-Binding Protein-Associated Factor Associated Factor 3,Transcription Initiation Factor Tfiid 1 Subunit,Taf(II)140,Taf140,Tafii-140,Tafii140;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf3
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 11
Chain: k
Synonym: Tfiid Subunit P30-Beta,Transcription Initiation Fa 28 Kda Subunit,Taf(II)28,Tafii-28,Tafii28;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf11, Taf2i, Pro2134
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Transcription Initiation Factor Tfiid Subunit 13
Chain: m
Synonym: Transcription Initiation Factor Tfiid 18 Kda Subun Taf(II)18,Tafii-18,Tafii18;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf13, Taf2k, Tafii18
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Dna-Directed Rna Polymerase Subunit
Chain: o
Ec: 2.7.7.6

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna-Directed Rna Polymerase Subunit Beta
Chain: p
Ec: 2.7.7.6

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb3
Chain: q

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb4
Chain: r
Synonym: Dna-Directed Rna Polymerase II Subunit Rpb4 Isofor

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna-Directed Rna Polymerase II Subunit E
Chain: s
Synonym: Rpb5 Homolog

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna-Directed Rna Polymerase II Subunit F
Chain: t
Synonym: Dna-Directed Rna Polymerases I,II,And III Subunit Rpb6 Homolog;

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna-Directed Rna Polymerases I, II, And III Subun
Chain: v

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb9
Chain: w
Synonym: Rna Polymerase II Subunit B9,Dna-Directed Rna Poly Subunit I,Rna Polymerase II 14.5 Kda Subunit,Rpb14.5;

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Rpb10
Chain: x

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Rna_pol_l_2 Domain-Containing Protein
Chain: y

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Rpb12
Chain: z

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Dna (85-Mer)
Chain: X
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (85-Mer)
Chain: Y
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna-Directed Rna Polymerase II Subunit Rpb7
Chain: u

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.10 Å
ligand MG, ZN enzyme Transferase E.C.2.3.1.48 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1597 Kb) [Save to disk]
  • Biological Unit Coordinates (7ega.pdb1.gz) 1532 Kb
  • LPC: Ligand-Protein Contacts for 7EGA
  • CSU: Contacts of Structural Units for 7EGA
  • Retrieve 7EGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7EGA from S2C, [Save to disk]
  • View 7EGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 7EGA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7ega_z] [7ega_I] [7ega_D] [7ega_f] [7ega_J] [7ega_o] [7ega_v] [7ega_H] [7ega_B] [7ega_Q] [7ega_m] [7ega_S] [7ega_l] [7ega_p] [7ega_y] [7ega_q] [7ega_c] [7ega_V] [7ega_s] [7ega_L] [7ega_u] [7ega_X] [7ega_Y] [7ega_i] [7ega_t] [7ega_U] [7ega_j] [7ega_O] [7ega_k] [7ega_P] [7ega_d] [7ega_T] [7ega_e] [7ega_F] [7ega_x] [7ega_G] [7ega_r] [7ega_R] [7ega_w] [7ega_A] [7ega_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 7EGA
  • Community annotation for 7EGA at PDBWiki (http://pdbwiki.org)

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