4WV4 Transcription date Nov 04, 2014
title Heterodimer Of Taf8taf10
authors S.Trowitzsch
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 10
Chain: A
Fragment: Unp 112-212
Synonym: Staf28,Transcription Initiation Factor Tfiid 30 Kd Tafii30,Taf10;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf10, Taf2a, Taf2h, Tafii30
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Transcription Initiation Factor Tfiid Subunit 8
Chain: B
Fragment: Unp Residues 25-120
Synonym: Protein Taube Nuss,Tbp-Associated Factor 43 Kda,Tb Associated Factor 8,Transcription Initiation Factor Tfiid 4 Subunit,Htafii43,Taf8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf8, Tafii43, Tbn
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 31 2 1
R_factor 0.205 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.320 51.320 144.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.91 Å
ligand CL, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules., Trowitzsch S, Viola C, Scheer E, Conic S, Chavant V, Fournier M, Papai G, Ebong IO, Schaffitzel C, Zou J, Haffke M, Rappsilber J, Robinson CV, Schultz P, Tora L, Berger I, Nat Commun. 2015 Jan 14;6:6011. doi: 10.1038/ncomms7011. PMID:25586196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4wv4.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4WV4
  • CSU: Contacts of Structural Units for 4WV4
  • Structure Factors (167 Kb)
  • Retrieve 4WV4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WV4 from S2C, [Save to disk]
  • Re-refined 4wv4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WV4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WV4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4WV4, from MSDmotif at EBI
  • Fold representative 4wv4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wv4_B] [4wv4_A] [4wv4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WV4: [BTP ] by SMART
  • Other resources with information on 4WV4
  • Community annotation for 4WV4 at PDBWiki (http://pdbwiki.org)

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