3BN3 crystal structure of ICAM-5 in complex with aL I domain date
authors Zhang, H., Springer, T.A., Wang, J.h.
compound source
symmetry
R_factor
R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand GOL, MG, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceAn unusual allosteric mobility of the c-terminal helix of a high-affinity alphaL integrin I domain variant bound to ICAM-5., Zhang H, Casasnovas JM, Jin M, Liu JH, Gahmberg CG, Springer TA, Wang JH, Mol Cell. 2008 Aug 8;31(3):432-7. PMID:18691975
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3bn3.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 3BN3
  • CSU: Contacts of Structural Units for 3BN3
  • Likely Quarternary Molecular Structure file(s) for 3BN3
  • Structure Factors (550 Kb)
  • Retrieve 3BN3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BN3 from S2C, [Save to disk]
  • Re-refined 3bn3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BN3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BN3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BN3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bn3] [3bn3_A] [3bn3_B]
  • SWISS-PROT database: [Q9UMF0] [P20701]
  • Domain organization of [ICAM5_HUMAN] [ITAL_HUMAN] by SWISSPFAM
  • Domain found in 3BN3: [VWA ] by SMART
  • Other resources with information on 3BN3
  • Community annotation for 3BN3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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