3MLQ Crystal structure of the Thermus thermophilus transcription-repair coupling factor RNA polymerase interacting domain with the Thermus aquaticus RNA polymerase beta1 domain date
authors Darst, S.A., Westblade, L.F., Campbell, E.A.
compound source
symmetry
R_factor
R_Free 0.24983
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.91
ligand PO4 enzyme
note 3MLQ is a representative structure
Gene TT
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for the bacterial transcription-repair coupling factor/RNA polymerase interaction., Westblade LF, Campbell EA, Pukhrambam C, Padovan JC, Nickels BE, Lamour V, Darst SA, Nucleic Acids Res. 2010 Aug 11. PMID:20702425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (3mlq.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (3mlq.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (3mlq.pdb3.gz) 61 Kb
  • Biological Unit Coordinates (3mlq.pdb4.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3MLQ
  • CSU: Contacts of Structural Units for 3MLQ
  • Structure Factors (159 Kb)
  • Retrieve 3MLQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MLQ from S2C, [Save to disk]
  • Re-refined 3mlq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MLQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MLQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3MLQ, from MSDmotif at EBI
  • Fold representative 3mlq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mlq_D] [3mlq] [3mlq_G] [3mlq_A] [3mlq_C] [3mlq_B] [3mlq_F] [3mlq_E] [3mlq_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MLQ: [CarD_TRCF ] by SMART
  • Other resources with information on 3MLQ
  • Community annotation for 3MLQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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