5Z38 Rna Binding Protein Chaperone date Jan 05, 2018
title Crystal Structure Of Csra Bound To Cest
authors F.Ye, F.Yang, R.Yu, X.Lin, J.Qi, Z.Chen, G.F.Gao, G.Lu
compound source
Molecule: Cest Protein
Chain: A, B, C, D
Synonym: Chaperone Cest,Type III Secretion System,Chaperone Lee Associated;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Cest, Ers085406_02303, L537_036, Lihit_032
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Truncated-Csra
Chain: E, G, I, K
Synonym: Carbon Storage Regulator
Engineered: Yes
Other_details: Truncated-Csra And Wild Type Csra Are Linked Ggggsggggs Linker.;

Organism_scientific: Escherichia Coli O127:H6 Str. E234869
Organism_taxid: 574521
Strain: E234869 Epec
Variant: Unp Residues 1-44
Gene: Csra, E2348c_2959
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Wild Type Csra
Chain: F, H, J, L
Synonym: Carbon Storage Regulator
Engineered: Yes

Organism_scientific: Escherichia Coli O127:H6 Str. E234869
Organism_taxid: 574521
Strain: E234869 Epec
Gene: Csra, E2348c_2959
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.233 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
252.750 52.546 93.356 90.00 96.73 90.00
method X-Ray Diffractionresolution 2.29 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


F, J, H, L


K, E, I, G


Primary referenceMolecular basis of binding between the global post-transcriptional regulator CsrA and the T3SS chaperone CesT., Ye F, Yang F, Yu R, Lin X, Qi J, Chen Z, Cao Y, Wei Y, Gao GF, Lu G, Nat Commun. 2018 Mar 22;9(1):1196. doi: 10.1038/s41467-018-03625-x. PMID:29567971
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (341 Kb) [Save to disk]
  • Biological Unit Coordinates (5z38.pdb1.gz) 167 Kb
  • Biological Unit Coordinates (5z38.pdb2.gz) 165 Kb
  • CSU: Contacts of Structural Units for 5Z38
  • Structure Factors (1511 Kb)
  • Retrieve 5Z38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z38 from S2C, [Save to disk]
  • View 5Z38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Z38
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z38_E] [5z38_H] [5z38_L] [5z38_C] [5z38_F] [5z38_B] [5z38_A] [5z38_K] [5z38_D] [5z38_G] [5z38_I] [5z38_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Z38
  • Community annotation for 5Z38 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science