7T17	Virus	date	Dec 01, 2021
title	Zika Virus Asymmetric Unit Bound With Igm Antibody Dh1017 Fa
authors	A.S.Miller, R.J.Kuhn
compound		source
Molecule: Dh1017.Igm Fabc Constant Domain Chain: H Synonym: Immunoglobulin Gamma-1 Heavy Chain Nie,Immunoglobu Heavy Chain; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: B-Lcl Cells
Molecule: Dh1017.Igm Lambdac Constant Domain Chain: I Synonym: G Lambda-1,Germline Immunoglobulin Lambda 1,Immuno Lambda-Like Polypeptide 5; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Igll5 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: B-Lcl Cells
Molecule: Dh1017.Igm Igh Chain: J, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: B-Lcl Cells
Molecule: Dh1017.Igm Igl Chain: K, G Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: B-Lcl Cells
Molecule: Core Protein Chain: A, C, E Synonym: Envelope Protein E,Flavivirin Protease Ns2b Regula Subunit,Flavivirin Protease Ns3 Catalytic Subunit,Genome Po Matrix Protein,Non-Structural Protein 1,Non-Structural Prot Non-Structural Protein 2b,Non-Structural Protein 3,Non-Stru Protein 4a,Non-Structural Protein 4b,Peptide 2k,Peptide Pr, Prm,Rna-Directed Rna Polymerase Ns5,Serine Protease Ns3,Ser Protease Subunit Ns2b,Small Envelope Protein M; Ec: 3.4.21.91,3.6.1.15,3.6.4.13		Organism_scientific: Zika Virus Organism_taxid: 64320
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	5.26 Å
ligand		enzyme	Hydrolase E.C.3.4.21.91 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (7t17.pdb1.gz) 8267 Kb CSU: Contacts of Structural Units for 7T17 Retrieve 7T17 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 7T17 from S2C, [Save to disk]

View 7T17 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 7T17

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [7t17_C] [7t17_E] [7t17_A] [7t17_J] [7t17_I] [7t17_K] [7t17_H] [7t17_F] [7t17_G] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 7T17

Community annotation for 7T17 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---