5TKM	Crystal structure of human APOBEC3B N-terminal Domain	date
authors	Xiao, X., Yang, H., Arutiunian, V., Besse, G., Morimoto, C., Zirkle, B., Chen, X.S.
compound		source
symmetry		R_factor R_Free 0.2027
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.90
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural determinants of APOBEC3B non-catalytic domain for molecular assembly and catalytic regulation., Xiao X, Yang H, Arutiunian V, Fang Y, Besse G, Morimoto C, Zirkle B, Chen XS, Nucleic Acids Res. 2017 Jul 7;45(12):7494-7506. doi: 10.1093/nar/gkx362. PMID:28575276

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (5tkm.pdb1.gz) 35 Kb Biological Unit Coordinates (5tkm.pdb2.gz) 35 Kb LPC: Ligand-Protein Contacts for 5TKM CSU: Contacts of Structural Units for 5TKM Structure Factors (985 Kb) Retrieve 5TKM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TKM from S2C, [Save to disk] Re-refined 5tkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TKM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TKM

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5tkm from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tkm_B] [5tkm_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5TKM

Community annotation for 5TKM at PDBWiki (http://pdbwiki.org)

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