1KU9	Dna Binding Protein	date	Jan 21, 2002
title	X-Ray Structure Of A Methanococcus Jannaschii Dna-Binding Pr Implications For Antibiotic Resistance In Staphylococcus Au
authors	S.S.Ray, J.B.Bonanno, H.Chen, H.De Lencastre, S.Wu, A.Tomasz, S.K. New York Sgx Research Center For Structural Genomics (Nysgx
compound		source
Molecule: Hypothetical Protein Mj223 Chain: A, B Synonym: Hypothetical Protein Mj1563 Engineered: Yes Other_details: Nysgrc Target T088		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 2190 Gene: Mj223 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pskb2
symmetry	Space Group: P 65	R_factor 0.241 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.939 56.939 209.515 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus., Ray SS, Bonanno JB, Chen H, de Lencastre H, Wu S, Tomasz A, Burley SK, Proteins 2003 Jan 1;50(1):170-3. PMID:12471609

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1ku9.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 1KU9 CSU: Contacts of Structural Units for 1KU9 Likely Quarternary Molecular Structure file(s) for 1KU9 Retrieve 1KU9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1KU9 from S2C, [Save to disk]

View 1KU9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1KU9

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1KU9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ku9a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ku9b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ku9_B] [1ku9_A] [1ku9] SWISS-PROT database: [Q58958] Domain organization of [Y1563_METJA] by SWISSPFAM

Other resources with information on 1KU9

Community annotation for 1KU9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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